Paleoproteomics

C Warinner, K Korzow Richter, MJ Collins - Chemical reviews, 2022 - ACS Publications
Paleoproteomics, the study of ancient proteins, is a rapidly growing field at the intersection of
molecular biology, paleontology, archaeology, paleoecology, and history. Paleoproteomics …

[HTML][HTML] Considerations for constructing a protein sequence database for metaproteomics

JA Blakeley-Ruiz, M Kleiner - Computational and structural biotechnology …, 2022 - Elsevier
Mass spectrometry-based metaproteomics has emerged as a prominent technique for
interrogating the functions of specific organisms in microbial communities, in addition to total …

ProTInSeq: transposon insertion tracking by ultra-deep DNA sequencing to identify translated large and small ORFs

S Miravet-Verde, R Mazzolini… - Nature …, 2024 - nature.com
Identifying open reading frames (ORFs) being translated is not a trivial task. ProTInSeq is a
technique designed to characterize proteomes by sequencing transposon insertions …

Big data, integrative omics and network biology

P Tolani, S Gupta, K Yadav, S Aggarwal… - Advances in protein …, 2021 - Elsevier
A cell integrates various signals through a network of biomolecules that crosstalk to
synergistically regulate the replication, transcription, translation and other metabolic …

False discovery rate: the Achilles' heel of proteogenomics

S Aggarwal, A Raj, D Kumar, D Dash… - Briefings in …, 2022 - academic.oup.com
Proteogenomics refers to the integrated analysis of the genome and proteome that
leverages mass-spectrometry (MS)-based proteomics data to improve genome annotations …

An overview of technologies for MS-based proteomics-centric multi-omics

AT Rajczewski, PD Jagtap, TJ Griffin - Expert review of proteomics, 2022 - Taylor & Francis
Introduction Mass spectrometry-based proteomics reveals dynamic molecular signatures
underlying phenotypes reflecting normal and perturbed conditions in living systems …

Comprehensive overview of bottom-up proteomics using mass spectrometry

Y Jiang, DAB Rex, D Schuster, BA Neely… - ACS Measurement …, 2024 - ACS Publications
Proteomics is the large scale study of protein structure and function from biological systems
through protein identification and quantification.“Shotgun proteomics” or “bottom-up …

Optimisation of protein extraction for in-depth profiling of the cereal grain proteome

U Bose, JA Broadbent, K Byrne, S Hasan, CA Howitt… - Journal of …, 2019 - Elsevier
Cereal grain proteomics can provide valuable information regarding plant growth, nutritional
status, adaptation to environmental stresses, and the role that grain proteins play in health …

[HTML][HTML] The research progress of bioactive peptides derived from traditional natural products in China

Y Zhang, L Liu, M Zhang, S Li, J Wu, Q Sun, S Ma… - Molecules, 2023 - mdpi.com
Traditional natural products in China have a long history and a vast pharmacological
repertoire that has garnered significant attention due to their safety and efficacy in disease …

A single honey proteome dataset for identifying adulteration by foreign amylases and mining various protein markers natural to honey

T Erban, E Shcherbachenko, P Talacko, K Harant - Journal of Proteomics, 2021 - Elsevier
Honey adulteration is a common practice that deceives consumers and devalues the unique
curative and food properties of honey. For marketing, each honey must satisfy an …