Stochastic switching in biology: from genotype to phenotype

PC Bressloff - Journal of Physics A: Mathematical and …, 2017 - iopscience.iop.org
There has been a resurgence of interest in non-equilibrium stochastic processes in recent
years, driven in part by the observation that the number of molecules (genes, mRNA …

[BOOK][B] Stochastic processes in cell biology

PC Bressloff - 2014 - Springer
One of the major challenges in modern biology is to understand how the molecular
components of a living cell operate in a highly noisy environment. What are the specific …

[HTML][HTML] First order transition to oscillation death through an environment

UK Verma, A Sharma, NK Kamal, MD Shrimali - Physics Letters A, 2018 - Elsevier
The emergence of dynamical abrupt transitions for the first time in an ensemble of identical
limit-cycle and chaotic oscillators coupled via a common environment is reported. The …

An asymptotic analysis of a 2-D model of dynamically active compartments coupled by bulk diffusion

J Gou, MJ Ward - Journal of Nonlinear Science, 2016 - Springer
A class of coupled cell–bulk ODE–PDE models is formulated and analyzed in a two-
dimensional domain, which is relevant to studying quorum-sensing behavior on thin …

Traveling waves in response to a diffusing quorum sensing signal in spatially-extended bacterial colonies

JB Langebrake, GE Dilanji, SJ Hagen… - Journal of theoretical …, 2014 - Elsevier
In the behavior known as quorum sensing (QS), bacteria release diffusible signal molecules
known as autoinducers, which by accumulating in the environment induce population-wide …

[HTML][HTML] Suppression and revival of oscillation in indirectly coupled limit cycle oscillators

PR Sharma, NK Kamal, UK Verma, K Suresh… - Physics Letters A, 2016 - Elsevier
We study the phenomena of suppression and revival of oscillations in a system of limit cycle
oscillators coupled indirectly via a dynamic local environment. The dynamics of the …

Achieving criticality for reservoir computing using environment-induced explosive death

S Mandal, MD Shrimali - Chaos: An Interdisciplinary Journal of …, 2021 - pubs.aip.org
The network of oscillators coupled via a common environment has been widely studied due
to its great abundance in nature. We exploit the occurrence of explosive oscillation …

Synchronization and quorum sensing in an ensemble of indirectly coupled chaotic oscillators

BW Li, C Fu, H Zhang, X Wang - Physical Review E—Statistical, Nonlinear, and …, 2012 - APS
The fact that the elements in some realistic systems are influenced by each other indirectly
through a common environment has stimulated a new surge of studies on the collective …

Oscillation suppression in indirectly coupled limit cycle oscillators

NK Kamal, PR Sharma, MD Shrimali - Physical Review E, 2015 - APS
We study the phenomena of oscillation quenching in a system of limit cycle oscillators which
are coupled indirectly via a dynamic environment. The dynamics of the environment is …

A theory of synchrony by coupling through a diffusive chemical signal

J Gou, WY Chiang, PY Lai, MJ Ward, YX Li - Physica D: Nonlinear …, 2017 - Elsevier
We formulate and analyze oscillatory dynamics associated with a model of dynamically
active, but spatially segregated, compartments that are coupled through a chemical signal …