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Reviving the transcriptome studies: an insight into the emergence of single-molecule transcriptome sequencing
Advances in transcriptomics have provided an exceptional opportunity to study functional
implications of the genetic variability. Technologies such as RNA-Seq have emerged as …
implications of the genetic variability. Technologies such as RNA-Seq have emerged as …
Genome-wide analysis of RNA secondary structure
PC Bevilacqua, LE Ritchey, Z Su… - Annual review of …, 2016 - annualreviews.org
Single-stranded RNA molecules fold into extraordinarily complicated secondary and tertiary
structures as a result of intramolecular base pairing. In vivo, these RNA structures are not …
structures as a result of intramolecular base pairing. In vivo, these RNA structures are not …
A survey of the sorghum transcriptome using single-molecule long reads
SE Abdel-Ghany, M Hamilton, JL Jacobi… - Nature …, 2016 - nature.com
Alternative splicing and alternative polyadenylation (APA) of pre-mRNAs greatly contribute
to transcriptome diversity, coding capacity of a genome and gene regulatory mechanisms in …
to transcriptome diversity, coding capacity of a genome and gene regulatory mechanisms in …
In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features
RNA structure has critical roles in processes ranging from ligand sensing to the regulation of
translation, polyadenylation and splicing,,,. However, a lack of genome-wide in vivo RNA …
translation, polyadenylation and splicing,,,. However, a lack of genome-wide in vivo RNA …
Abiotic and biotic stresses induce a core transcriptome response in rice
Environmental stresses greatly limit crop yield. With the increase in extreme weather events
due to climate change and the constant pressure of diseases and pests, there is an urgent …
due to climate change and the constant pressure of diseases and pests, there is an urgent …
A global survey of alternative splicing in allopolyploid cotton: landscape, complexity and regulation
Alternative splicing (AS) is a crucial regulatory mechanism in eukaryotes, which acts by
greatly increasing transcriptome diversity. The extent and complexity of AS has been …
greatly increasing transcriptome diversity. The extent and complexity of AS has been …
Transcript‐level expression control of plant NLR genes
Y Lai, T Eulgem - Molecular plant pathology, 2018 - Wiley Online Library
Plant NLR genes encode sensitive immune receptors that can mediate the specific
recognition of pathogen avirulence effectors and activate a strong defence response, termed …
recognition of pathogen avirulence effectors and activate a strong defence response, termed …
A decade of pollen transcriptomics
N Rutley, D Twell - Plant reproduction, 2015 - Springer
Key message Overview of pollen transcriptome studies. Pollen development is driven by
gene expression, and knowledge of the molecular events underlying this process has …
gene expression, and knowledge of the molecular events underlying this process has …
A comparative transcriptional landscape of maize and sorghum obtained by single-molecule sequencing
Maize and sorghum are both important crops with similar overall plant architectures, but they
have key differences, especially in regard to their inflorescences. To better understand these …
have key differences, especially in regard to their inflorescences. To better understand these …
Improved Reference Genome Annotation of Brassica rapa by Pacific Biosciences RNA Sequencing
The species Brassica rapa includes several important vegetable crops. The draft reference
genome of B. rapa ssp. pekinensis was completed in 2011, and it has since been updated …
genome of B. rapa ssp. pekinensis was completed in 2011, and it has since been updated …