Mechanisms for DNA charge transport

JC Genereux, JK Barton - Chemical reviews, 2010 - ACS Publications
DNA charge transport (CT) chemistry has received considerable attention by scientific
researchers over the past 15 years since our first provocative publication on long-range CT …

Conformational coupling in DNA polymerase fidelity.

KA Johnson - Annual review of biochemistry, 1993 - europepmc.org
The fidelity of DNA polymerases is largely attributable to a two-step nucleotide binding
mechanism. In the first step, binding contacts are initially made between the template and …

Thermodynamics and NMR of internal G⊙ T mismatches in DNA

HT Allawi, J SantaLucia - Biochemistry, 1997 - ACS Publications
Thermodynamics of 39 oligonucleotides with internal G⊙ T mismatches dissolved in 1 M
NaCl were determined from UV absorbance versus temperature profiles. These data were …

[PDF][PDF] A standard reference frame for the description of nucleic acid base-pair geometry

WK Olson, M Bansal, SK Burley… - Journal of molecular …, 2001 - academia.edu
A common point of reference is needed to describe the three-dimensional arrangements of
bases and base-pairs in nucleic acid structures. The different standards used in computer …

Crystal Structures of Human DNA Polymerase β Complexed with Gapped and Nicked DNA:  Evidence for an Induced Fit Mechanism,

MR Sawaya, R Prasad, SH Wilson, J Kraut… - Biochemistry, 1997 - ACS Publications
DNA polymerase β (pol β) fills single nucleotide (nt) gaps in DNA produced by the base
excision repair pathway of mammalian cells. Crystal structures have been determined …

Structure of the replicating complex of a pol α family DNA polymerase

MC Franklin, J Wang, TA Steitz - Cell, 2001 - cell.com
We describe the 2.6 Å resolution crystal structure of RB69 DNA polymerase with primer-
template DNA and dTTP, capturing the step just before primer extension. This ternary …

B-DNA twisting correlates with base-pair morphology

AA Gorin, VB Zhurkin, K Wilma - Journal of molecular biology, 1995 - Elsevier
The observed sequence dependence of the mean twist angles in 38B-DNA crystal structures
can be understood in terms of simple geometrical features of the constituent base-pairs …

Structures of mismatch replication errors observed in a DNA polymerase

SJ Johnson, LS Beese - Cell, 2004 - cell.com
Accurate DNA replication is essential for genomic stability. One mechanism by which high-
fidelity DNA polymerases maintain replication accuracy involves stalling of the polymerase …

Structural basis of high-fidelity DNA synthesis by yeast DNA polymerase δ

MK Swan, RE Johnson, L Prakash, S Prakash… - Nature structural & …, 2009 - nature.com
DNA polymerase δ (Pol δ) is a high-fidelity polymerase that has a central role in replication
from yeast to humans. We present the crystal structure of the catalytic subunit of yeast Pol δ …

The structural impact of DNA mismatches

G Rossetti, PD Dans, I Gomez-Pinto, I Ivani… - Nucleic acids …, 2015 - academic.oup.com
The structure and dynamics of all the transversion and transition mismatches in three
different DNA environments have been characterized by molecular dynamics simulations …