Consensus guidelines for the use and interpretation of angiogenesis assays

P Nowak-Sliwinska, K Alitalo, E Allen, A Anisimov… - Angiogenesis, 2018 - Springer
The formation of new blood vessels, or angiogenesis, is a complex process that plays
important roles in growth and development, tissue and organ regeneration, as well as …

Harnessing genomic information for livestock improvement

M Georges, C Charlier, B Hayes - Nature Reviews Genetics, 2019 - nature.com
The world demand for animal-based food products is anticipated to increase by 70% by
2050. Meeting this demand in a way that has a minimal impact on the environment will …

Evolutionary analysis of a complete chicken genome

Z Huang, Z Xu, H Bai, Y Huang, N Kang, X Ding… - Proceedings of the …, 2023 - pnas.org
Microchromosomes are prevalent in nonmammalian vertebrates [PD Waters et al., Proc.
Natl. Acad. Sci. USA 118 (2021)], but a few of them are missing in bird genome assemblies …

Towards complete and error-free genome assemblies of all vertebrate species

A Rhie, SA McCarthy, O Fedrigo, J Damas, G Formenti… - Nature, 2021 - nature.com
High-quality and complete reference genome assemblies are fundamental for the
application of genomics to biology, disease, and biodiversity conservation. However, such …

3D genomics across the tree of life reveals condensin II as a determinant of architecture type

C Hoencamp, O Dudchenko, AMO Elbatsh… - Science, 2021 - science.org
We investigated genome folding across the eukaryotic tree of life. We find two types of three-
dimensional (3D) genome architectures at the chromosome scale. Each type appears and …

Complexity of avian evolution revealed by family-level genomes

J Stiller, S Feng, AA Chowdhury, I Rivas-González… - Nature, 2024 - nature.com
Despite tremendous efforts in the past decades, relationships among main avian lineages
remain heavily debated without a clear resolution. Discrepancies have been attributed to …

The Ensembl gene annotation system

BL Aken, S Ayling, D Barrell, L Clarke, V Curwen… - Database, 2016 - academic.oup.com
The Ensembl gene annotation system has been used to annotate over 70 different
vertebrate species across a wide range of genome projects. Furthermore, it generates the …

Building a livestock genetic and genomic information knowledgebase through integrative developments of Animal QTLdb and CorrDB

ZL Hu, CA Park, JM Reecy - Nucleic acids research, 2019 - academic.oup.com
Successful development of biological databases requires accommodation of the burgeoning
amounts of data from high-throughput genomics pipelines. As the volume of curated data in …

[HTML][HTML] Poultry industry paradigms: connecting the dots

FLS Castro, L Chai, J Arango, CM Owens… - Journal of Applied …, 2023 - Elsevier
Providing high-quality food for the increasing world population with limited natural resources
is a challenge for animal agriculture. Over the past decades, poultry production has …

Whole-genome analyses resolve early branches in the tree of life of modern birds

ED Jarvis, S Mirarab, AJ Aberer, B Li, P Houde, C Li… - Science, 2014 - science.org
To better determine the history of modern birds, we performed a genome-scale phylogenetic
analysis of 48 species representing all orders of Neoaves using phylogenomic methods …