Computational and biophysical methods for the discovery and optimization of covalent drugs
Drugs that act by covalently attaching to their targets have been used to treat human
diseases for over a hundred years. However, the deliberate design of covalent drugs was …
diseases for over a hundred years. However, the deliberate design of covalent drugs was …
Quantifying side-chain conformational variations in protein structure
Z Miao, Y Cao - Scientific reports, 2016 - nature.com
Protein side-chain conformation is closely related to their biological functions. The side-
chain prediction is a key step in protein design, protein docking and structure optimization …
chain prediction is a key step in protein design, protein docking and structure optimization …
Exploiting sequence-dependent rotamer information in global optimization of proteins
L Dicks, DJ Wales - The Journal of Physical Chemistry B, 2022 - ACS Publications
Rotamers, namely amino acid side chain conformations common to many different peptides,
can be compiled into libraries. These rotamer libraries are used in protein modeling, where …
can be compiled into libraries. These rotamer libraries are used in protein modeling, where …
Why insulin aspart and insulin degludec exhibit distinct release mechanisms
ZL Li, YH Feng, J Jiao, XY Ju, L Yu, GL Zhang… - AIChE …, 2025 - Wiley Online Library
Exploring the molecular mechanisms underlying insulin analogs is important for protein
engineering to design innovative drug proteins. Insulin aspart (IAsp) and insulin degludec …
engineering to design innovative drug proteins. Insulin aspart (IAsp) and insulin degludec …
Active site crowding of cytochrome P450 3A4 as a strategy to alter its selectivity
P Schiavini, KJ Cheong, N Moitessier… - ChemBioChem, 2017 - Wiley Online Library
Substrate‐promiscuous enzymes are a promising starting point for the development of
versatile biocatalysts. In this study, human cytochrome P450 3A4, known for its ability to …
versatile biocatalysts. In this study, human cytochrome P450 3A4, known for its ability to …
PON-SC–program for identifying steric clashes caused by amino acid substitutions
J Čalyševa, M Vihinen - BMC bioinformatics, 2017 - Springer
Background Amino acid substitutions due to DNA nucleotide replacements are frequently
disease-causing because of affecting functionally important sites. If the substituting amino …
disease-causing because of affecting functionally important sites. If the substituting amino …
Prediction of protein mutation effects based on dehydration and hydrogen bonding–A large‐scale study
KT Schomburg, E Nittinger, A Meyder… - Proteins: Structure …, 2017 - Wiley Online Library
Reliable computational prediction of protein side chain conformations and the energetic
impact of amino acid mutations are the key aspects for the optimization of biotechnologically …
impact of amino acid mutations are the key aspects for the optimization of biotechnologically …
[書籍][B] Towards virtual biocatalysis: computational methods development for organometallic catalysts and enzyme engineering
A Tomberg - 2017 - search.proquest.com
Presently, most industrial chemical production relies on catalytic processes, that represent
an economical and more environmentally friendly alternative to classic stoichiometric …
an economical and more environmentally friendly alternative to classic stoichiometric …
Active site crowding of P450 3A4 as a strategy to alter its selectivity
P Schiavini, KJ Cheong, N Moitessier, K Auclair - 2016 - escholarship.mcgill.ca
Substrate promiscuous enzymes are a promising starting point for the development of
versatile biocatalysts. In this study, human cytochrome P450 3A4, known for its ability to …
versatile biocatalysts. In this study, human cytochrome P450 3A4, known for its ability to …
[書籍][B] From drug design to drug metabolism and biocatalysis: exploring the realm of proteins for pharmaceutical applications
P Schiavini - 2016 - search.proquest.com
Being implicated in all aspects of life, proteins are at the center of pharmaceutical
development. Not only do they represent the most common pharmacological target, but they …
development. Not only do they represent the most common pharmacological target, but they …