Bayesian statistics and modelling
Bayesian statistics is an approach to data analysis based on Bayes' theorem, where
available knowledge about parameters in a statistical model is updated with the information …
available knowledge about parameters in a statistical model is updated with the information …
Bayesian analysis reporting guidelines
JK Kruschke - Nature human behaviour, 2021 - nature.com
Previous surveys of the literature have shown that reports of statistical analyses often lack
important information, causing lack of transparency and failure of reproducibility. Editors and …
important information, causing lack of transparency and failure of reproducibility. Editors and …
[HTML][HTML] Empowering biomedical discovery with AI agents
We envision" AI scientists" as systems capable of skeptical learning and reasoning that
empower biomedical research through collaborative agents that integrate AI models and …
empower biomedical research through collaborative agents that integrate AI models and …
Reproducible, scalable, and shareable analysis pipelines with bioinformatics workflow managers
The rapid growth of high-throughput technologies has transformed biomedical research.
With the increasing amount and complexity of data, scalability and reproducibility have …
With the increasing amount and complexity of data, scalability and reproducibility have …
Therapeutics data commons: Machine learning datasets and tasks for drug discovery and development
Therapeutics machine learning is an emerging field with incredible opportunities for
innovatiaon and impact. However, advancement in this field requires formulation of …
innovatiaon and impact. However, advancement in this field requires formulation of …
Packaging research artefacts with RO-Crate
An increasing number of researchers support reproducibility by including pointers to and
descriptions of datasets, software and methods in their publications. However, scientific …
descriptions of datasets, software and methods in their publications. However, scientific …
A large-scale study on research code quality and execution
This article presents a study on the quality and execution of research code from publicly-
available replication datasets at the Harvard Dataverse repository. Research code is …
available replication datasets at the Harvard Dataverse repository. Research code is …
RegulonDB v12.0: a comprehensive resource of transcriptional regulation in E. coli K-12
H Salgado, S Gama-Castro, P Lara… - Nucleic Acids …, 2024 - academic.oup.com
RegulonDB is a database that contains the most comprehensive corpus of knowledge of the
regulation of transcription initiation of Escherichia coli K-12, including data from both …
regulation of transcription initiation of Escherichia coli K-12, including data from both …
Eleven quick tips for data cleaning and feature engineering
Applying computational statistics or machine learning methods to data is a key component of
many scientific studies, in any field, but alone might not be sufficient to generate robust and …
many scientific studies, in any field, but alone might not be sufficient to generate robust and …
Metabolomics and multi-omics integration: a survey of computational methods and resources
As researchers are increasingly able to collect data on a large scale from multiple clinical
and omics modalities, multi-omics integration is becoming a critical component of …
and omics modalities, multi-omics integration is becoming a critical component of …