Oscillatory dynamics in a bacterial cross-protection mutualism

EA Yurtsev, A Conwill, J Gore - Proceedings of the National …, 2016 - National Acad Sciences
Cooperation between microbes can enable microbial communities to survive in harsh
environments. Enzymatic deactivation of antibiotics, a common mechanism of antibiotic …

Whole-genome screens reveal regulators of differentiation state and context-dependent migration in human neutrophils

NM Belliveau, MJ Footer, E Akdoǧan… - Nature …, 2023 - nature.com
Neutrophils are the most abundant leukocyte in humans and provide a critical early line of
defense as part of our innate immune system. We perform a comprehensive, genome-wide …

FlowCal: a user-friendly, open source software tool for automatically converting flow cytometry data from arbitrary to calibrated units

SM Castillo-Hair, JT Sexton, BP Landry… - ACS synthetic …, 2016 - ACS Publications
Flow cytometry is widely used to measure gene expression and other molecular biological
processes with single cell resolution via fluorescent probes. Flow cytometers output data in …

FlowKit: a python toolkit for integrated manual and automated cytometry analysis workflows

S White, J Quinn, J Enzor, J Staats, SM Mosier… - Frontiers in …, 2021 - frontiersin.org
An important challenge for primary or secondary analysis of cytometry data is how to
facilitate productive collaboration between domain and quantitative experts. Domain experts …

Self-cleaving peptides for expression of multiple genes in Dictyostelium discoideum

X Zhu, C Ricci-Tam, ER Hager, AE Sgro - Plos one, 2023 - journals.plos.org
The social amoeba Dictyostelium discoideum is a model for a wide range of biological
processes including chemotaxis, cell-cell communication, phagocytosis, and development …

Role of a holo-insertase complex in the biogenesis of biophysically diverse ER membrane proteins

KR Page, VN Nguyen, T Pleiner, GP Tomaleri… - Molecular Cell, 2024 - cell.com
Mammalian membrane proteins perform essential physiologic functions that rely on their
accurate insertion and folding at the endoplasmic reticulum (ER). Using forward and arrayed …

A function of TPL/TBL1-type corepressors is to nucleate the assembly of the preinitiation complex

AR Leydon, B Downing, J Solano Sanchez… - Journal of Cell …, 2024 - rupress.org
The plant corepressor TPL is recruited to diverse chromatin contexts, yet its mechanism of
repression remains unclear. Previously, we leveraged the fact that TPL retains its function in …

A phosphatase‐centric mechanism drives stress signaling response

DM Hollenstein, G Gérecová, N Romanov, J Ferrari… - EMBO …, 2021 - embopress.org
Changing environmental cues lead to the adjustment of cellular physiology by
phosphorylation signaling networks that typically center around kinases as active effectors …

Rediversification following ecotype isolation reveals hidden adaptive potential

JA Ascensao, J Denk, K Lok, QQ Yu, KM Wetmore… - Current Biology, 2024 - cell.com
Microbial communities play a critical role in ecological processes, and their diversity is key to
their functioning. However, little is known about whether communities can regenerate …

Automated yeast cultivation control using a biosensor and flow cytometry

RP Foncillas, S Magnusson… - Journal of Industrial …, 2024 - academic.oup.com
Effective microbial bioprocessing relies on maintaining ideal cultivation conditions,
highlighting the necessity for tools that monitor and regulate cellular performance and …