A survey of graph layout problems

J Díaz, J Petit, M Serna - ACM Computing Surveys (CSUR), 2002 - dl.acm.org
Graph layout problems are a particular class of combinatorial optimization problems whose
goal is to find a linear layout of an input graph in such way that a certain objective cost is …

[BOOK][B] Graph classes: a survey

A Brandstädt, VB Le, JP Spinrad - 1999 - SIAM
When dealing with special graph classes and algorithmic problems on them, a main source
is the classical book of Golumbic, Algorithmic Graph Theory and Perfect Graphs [454]. The …

[BOOK][B] Tolerance graphs

MC Golumbic, AN Trenk - 2004 - books.google.com
The study of algorithmic graph theory and structured families of graphs is an important
branch of discrete mathematics. It finds numerous applications, from data transmission …

Four strikes against physical map** of DNA

PW Goldberg, MC Golumbic, H Kaplan… - Journal of …, 1995 - liebertpub.com
Physical map** is a central problem in molecular biology and the human genome project.
The problem is to reconstruct the relative position of fragments of DNA along the genome …

[HTML][HTML] Complexity classification of some edge modification problems

A Natanzon, R Shamir, R Sharan - Discrete Applied Mathematics, 2001 - Elsevier
In an edge modification problem one has to change the edge set of a given graph as little as
possible so as to satisfy a certain property. We prove the NP-hardness of a variety of edge …

Reasoning about temporal relations: The tractable subalgebras of Allen's interval algebra

A Krokhin, P Jeavons, P Jonsson - Journal of the ACM (JACM), 2003 - dl.acm.org
Allen's interval algebra is one of the best established formalisms for temporal reasoning.
This article provides the final step in the classification of complexity for satisfiability problems …

Map** the genome: some combinatorial problems arising in molecular biology

RM Karp - Proceedings of the twenty-fifth annual ACM symposium …, 1993 - dl.acm.org
The hereditary information that all living organisms pass on to their offspring is encoded in
DNA molecules packaged in structures called chromosomes within their cells. The genes …

Bradyrhizobium lablabi sp. nov., isolated from effective nodules of Lablab purpureus and Arachis hypogaea

YL Chang, JY Wang, ET Wang… - … of systematic and …, 2011 - microbiologyresearch.org
Five strains isolated from root nodules of Lablab purpureus and Arachis hypogaea grown in
the Anhui and Sichuan provinces of China were classified as members of the genus …

Generalized hypertree decompositions: NP-hardness and tractable variants

G Gottlob, Z Miklós, T Schwentick - Journal of the ACM (JACM), 2009 - dl.acm.org
The generalized hypertree width GHW (H) of a hypergraph H is a measure of its cyclicity.
Classes of conjunctive queries or constraint satisfaction problems whose associated …

Pathwidth, bandwidth, and completion problems to proper interval graphs with small cliques

H Kaplan, R Shamir - SIAM Journal on Computing, 1996 - SIAM
We study two related problems motivated by molecular biology.• Given a graph G and a
constant k, does there exist a supergraph G' of G that is a unit interval graph and has clique …