Adversarial uncertainty quantification in physics-informed neural networks
We present a deep learning framework for quantifying and propagating uncertainty in
systems governed by non-linear differential equations using physics-informed neural …
systems governed by non-linear differential equations using physics-informed neural …
Mesoscopic simulations at the physics-chemistry-biology interface
This review discusses the lattice Boltzmann–particle dynamics (LBPD) multiscale paradigm
for the simulation of complex states of flowing matter at the interface between physics …
for the simulation of complex states of flowing matter at the interface between physics …
OpenRBC: A fast simulator of red blood cells at protein resolution
We present OpenRBC, a coarse-grained molecular dynamics code, which is capable of
performing an unprecedented in silico experiment—simulating an entire mammal red blood …
performing an unprecedented in silico experiment—simulating an entire mammal red blood …
Bridging the computational gap between mesoscopic and continuum modeling of red blood cells for fully resolved blood flow
We present a computational framework for the simulation of blood flow with fully resolved
red blood cells (RBCs) using a modular approach that consists of a lattice Boltzmann solver …
red blood cells (RBCs) using a modular approach that consists of a lattice Boltzmann solver …
GPU-accelerated red blood cells simulations with transport dissipative particle dynamics
Mesoscopic numerical simulations provide a unique approach for the quantification of the
chemical influences on red blood cell functionalities. The transport Dissipative Particle …
chemical influences on red blood cell functionalities. The transport Dissipative Particle …
[PDF][PDF] 耗散粒子动力学方法在生物学领域的应用与研究进展: 从蛋白质结构到细胞力学
唐梓涵, **学进, **德昌 - 科学通报, 2023 - researchgate.net
摘要耗散粒子动力学(dissipative particle dynamics, DPD) 是**年发展起来的一种介观尺度的
数值模拟方法, 是研究软物质和复杂流体动力学行为的一种重要手段. 这种新型介观模拟方法 …
数值模拟方法, 是研究软物质和复杂流体动力学行为的一种重要手段. 这种新型介观模拟方法 …
A parallel fluid–solid coupling model using LAMMPS and Palabos based on the immersed boundary method
The study of viscous fluid flow coupled with rigid or deformable solids has many applications
in biological and engineering problems, eg, blood cell transport, drug delivery, and …
in biological and engineering problems, eg, blood cell transport, drug delivery, and …
Probing eukaryotic cell mechanics via mesoscopic simulations
K Lykov, Y Nematbakhsh, M Shang… - PLoS computational …, 2017 - journals.plos.org
Cell mechanics has proven to be important in many biological processes. Although there is
a number of experimental techniques which allow us to study mechanical properties of cell …
a number of experimental techniques which allow us to study mechanical properties of cell …
Intelligent dissipative particle dynamics: Bridging mesoscopic models from microscopic simulations via deep neural networks
We develop a bottom-up coarse graining framework to construct mesoscopic force fields
directly from microscopic dynamics by a machine learning technique. This scheme, called …
directly from microscopic dynamics by a machine learning technique. This scheme, called …
Digital blood in massively parallel CPU/GPU systems for the study of platelet transport
We propose a highly versatile computational framework for the simulation of cellular blood
flow focusing on extreme performance without compromising accuracy or complexity. The …
flow focusing on extreme performance without compromising accuracy or complexity. The …