Image-based profiling for drug discovery: due for a machine-learning upgrade?
Image-based profiling is a maturing strategy by which the rich information present in
biological images is reduced to a multidimensional profile, a collection of extracted image …
biological images is reduced to a multidimensional profile, a collection of extracted image …
[HTML][HTML] Data-analysis strategies for image-based cell profiling
Image-based cell profiling is a high-throughput strategy for the quantification of phenotypic
differences among a variety of cell populations. It paves the way to studying biological …
differences among a variety of cell populations. It paves the way to studying biological …
Cellpose: a generalist algorithm for cellular segmentation
Many biological applications require the segmentation of cell bodies, membranes and nuclei
from microscopy images. Deep learning has enabled great progress on this problem, but …
from microscopy images. Deep learning has enabled great progress on this problem, but …
Wilds: A benchmark of in-the-wild distribution shifts
Distribution shifts—where the training distribution differs from the test distribution—can
substantially degrade the accuracy of machine learning (ML) systems deployed in the wild …
substantially degrade the accuracy of machine learning (ML) systems deployed in the wild …
Cell detection with star-convex polygons
Automatic detection and segmentation of cells and nuclei in microscopy images is important
for many biological applications. Recent successful learning-based approaches include per …
for many biological applications. Recent successful learning-based approaches include per …
High-speed fluorescence image–enabled cell sorting
Fast and selective isolation of single cells with unique spatial and morphological traits
remains a technical challenge. Here, we address this by establishing high-speed image …
remains a technical challenge. Here, we address this by establishing high-speed image …
Nucleus segmentation across imaging experiments: the 2018 Data Science Bowl
Segmenting the nuclei of cells in microscopy images is often the first step in the quantitative
analysis of imaging data for biological and biomedical applications. Many bioimage analysis …
analysis of imaging data for biological and biomedical applications. Many bioimage analysis …
Toward a foundation model of causal cell and tissue biology with a Perturbation Cell and Tissue Atlas
JE Rood, A Hupalowska, A Regev - Cell, 2024 - cell.com
Comprehensively charting the biologically causal circuits that govern the phenotypic space
of human cells has often been viewed as an insurmountable challenge. However, in the last …
of human cells has often been viewed as an insurmountable challenge. However, in the last …
SARS-CoV-2 Receptor Angiotensin I-Converting Enzyme Type 2 (ACE2) Is Expressed in Human Pancreatic β-Cells and in the Human Pancreas Microvasculature
Increasing evidence demonstrated that the expression of Angiotensin I-Converting Enzyme
type 2 (ACE2) is a necessary step for SARS-CoV-2 infection permissiveness. In light of the …
type 2 (ACE2) is a necessary step for SARS-CoV-2 infection permissiveness. In light of the …
Deep learning in image-based phenotypic drug discovery
Modern drug discovery approaches often use high-content imaging to systematically study
the effect on cells of large libraries of chemical compounds. By automatically screening …
the effect on cells of large libraries of chemical compounds. By automatically screening …