Taking advantage of the genomics revolution for monitoring and conservation of chondrichthyan populations

S Johri, MP Doane, L Allen, EA Dinsdale - Diversity, 2019 - mdpi.com
Chondrichthyes (sharks, rays, skates and chimaeras) are among the oldest extant predators
and are vital to top-down regulation of oceanic ecosystems. They are an ecologically diverse …

Insights into the response of mangrove sediment microbiomes to heavy metal pollution: Ecological risk assessment and metagenomics perspectives

RM Puthusseri, HP Nair, TK Johny, SG Bhat - Journal of Environmental …, 2021 - Elsevier
Rapid urbanisation and ensuing anthropogenic pollution lead to an escalated occurrence of
heavy metals and metal-resistant bacteria in the soil ecosystem. Mangrove ecosystems are …

Urbanization and waterborne pathogen emergence in low-income countries: where and how to conduct surveys?

A Bastaraud, P Cecchi, P Handschumacher… - International Journal of …, 2020 - mdpi.com
A major forthcoming sanitary issue concerns the apparition and spreading of drug-resistant
microorganisms, potentially threatening millions of humans. In low-income countries …

Variability in microbial community composition and function between different niches within a coral reef

J Tout, TC Jeffries, NS Webster, R Stocker, PJ Ralph… - Microbial ecology, 2014 - Springer
To explore how microbial community composition and function varies within a coral reef
ecosystem, we performed metagenomic sequencing of seawater from four niches across …

Metagenomic comparison of microbial communities inhabiting confined and unconfined aquifer ecosystems

RJ Smith, TC Jeffries, B Roudnew… - Environmental …, 2012 - Wiley Online Library
A metagenomic analysis of two aquifer systems located under a dairy farming region was
performed to examine to what extent the composition and function of microbial communities …

Taxonomic and functional profiles of soil samples from Atlantic forest and Caatinga biomes in northeastern Brazil

RG Pacchioni, FM Carvalho, CE Thompson… - …, 2014 - Wiley Online Library
Although microorganisms play crucial roles in ecosystems, metagenomic analyses of soil
samples are quite scarce, especially in the Southern Hemisphere. In this work, the microbial …

Functional metagenomic investigations of microbial communities in a shallow-sea hydrothermal system

K Tang, K Liu, N Jiao, Y Zhang, CTA Chen - PloS one, 2013 - journals.plos.org
Little is known about the functional capability of microbial communities in shallow-sea
hydrothermal systems (water depth of< 200 m). This study analyzed two high-throughput …

[HTML][HTML] The abundance of functional genes, cbbL, nifH, amoA and apsA, and bacterial community structure of intertidal soil from Arabian Sea

J Keshri, B Yousuf, A Mishra, B Jha - Microbiological Research, 2015 - Elsevier
Abstract The Gulf of Cambay is a trumpet-shaped inlet of the Arabian Sea, located along the
west coast of India and confronts a high tidal range with strong water currents. The region …

Random whole metagenomic sequencing for forensic discrimination of soils

AS Khodakova, RJ Smith, L Burgoyne, D Abarno… - PloS one, 2014 - journals.plos.org
Here we assess the ability of random whole metagenomic sequencing approaches to
discriminate between similar soils from two geographically distinct urban sites for application …

Spatially extensive microbial biogeography of the Indian Ocean provides insights into the unique community structure of a pristine coral atoll

TC Jeffries, M Ostrowski, RB Williams, C **e… - Scientific Reports, 2015 - nature.com
Microorganisms act both as drivers and indicators of perturbations in the marine
environment. In an effort to establish baselines to predict the response of marine habitats to …