Hematopoietic stem cell a reservoir of innate immune memory

L Ruffinatto, Y Groult, J Iacono, S Sarrazin… - Frontiers in …, 2024 - frontiersin.org
Hematopoietic stem cells (HSCs) are a rare, long-lived and multipotent population that give
rise to majority of blood cells and some tissue-resident immune cells. There is growing …

Microheterogeneity in the kinetics and sex-specific response to type I IFN

ST Gal-Oz, A Baysoy, B Vijaykumar… - The Journal of …, 2024 - journals.aai.org
The response to type I IFNs involves the rapid induction of prototypical IFN signature genes
(ISGs). It is not known whether the tightly controlled ISG expression observed at the cell …

Compound-SNE: comparative alignment of t-SNEs for multiple single-cell omics data visualization

CG Cess, L Haghverdi - Bioinformatics, 2024 - academic.oup.com
One of the first steps in single-cell omics data analysis is visualization, which allows
researchers to see how well-separated cell-types are from each other. When visualizing …

Gene regulatory network inference with popInfer reveals dynamic regulation of hematopoietic stem cell quiescence upon diet restriction and aging

MK Rommelfanger, M Behrends, Y Chen, J Martinez… - …, 2023 - pmc.ncbi.nlm.nih.gov
Inference of gene regulatory networks (GRNs) can reveal cell state transitions from single-
cell genomics data. However, obstacles to temporal inference from snapshot data are …

Interferon modulates adult neurogenesis by regulating mRNA translation and cell cycle in neural stem cells

D Carvajal Ibanez - 2024 - archiv.ub.uni-heidelberg.de
Stem cells display intrinsic interferon signaling, which protects them from viral infections. In
the aging brain, the increased presence of interferons drives a decline in function in neural …