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Quantitative genetics and genomics converge to accelerate forest tree breeding
Forest tree breeding has been successful at delivering genetically improved material for
multiple traits based on recurrent cycles of selection, mating, and testing. However, long …
multiple traits based on recurrent cycles of selection, mating, and testing. However, long …
Genomic selection for forest tree improvement: methods, achievements and perspectives
VG Lebedev, TN Lebedeva, AI Chernodubov… - Forests, 2020 - mdpi.com
The breeding of forest trees is only a few decades old, and is a much more complicated,
longer, and expensive endeavor than the breeding of agricultural crops. One breeding cycle …
longer, and expensive endeavor than the breeding of agricultural crops. One breeding cycle …
Genome-Assisted Prediction of Quantitative Traits Using the R Package sommer
G Covarrubias-Pazaran - PloS one, 2016 - journals.plos.org
Most traits of agronomic importance are quantitative in nature, and genetic markers have
been used for decades to dissect such traits. Recently, genomic selection has earned …
been used for decades to dissect such traits. Recently, genomic selection has earned …
Modeling epistasis in genomic selection
Modeling epistasis in genomic selection is impeded by a high computational load. The
extended genomic best linear unbiased prediction (EG-BLUP) with an epistatic relationship …
extended genomic best linear unbiased prediction (EG-BLUP) with an epistatic relationship …
[HTML][HTML] Twelve years into genomic selection in forest trees: climbing the slope of enlightenment of marker assisted tree breeding
D Grattapaglia - Forests, 2022 - mdpi.com
Twelve years have passed since the early outlooks of applying genomic selection (GS) to
forest tree breeding, initially based on deterministic simulations, soon followed by empirical …
forest tree breeding, initially based on deterministic simulations, soon followed by empirical …
Orthogonal estimates of variances for additive, dominance, and epistatic effects in populations
Genomic prediction methods based on multiple markers have potential to include
nonadditive effects in prediction and analysis of complex traits. However, most …
nonadditive effects in prediction and analysis of complex traits. However, most …
[PDF][PDF] Environment-specific genomic prediction ability in maize using environmental covariates depends on environmental similarity to training data
AR Rogers, JB Holland - G3, 2022 - academic.oup.com
Technology advances have made possible the collection of a wealth of genomic,
environmental, and phenotypic data for use in plant breeding. Incorporation of …
environmental, and phenotypic data for use in plant breeding. Incorporation of …
The importance of dominance and genotype-by-environment interactions on grain yield variation in a large-scale public cooperative maize experiment
High-dimensional and high-throughput genomic, field performance, and environmental data
are becoming increasingly available to crop breeding programs, and their integration can …
are becoming increasingly available to crop breeding programs, and their integration can …
Genetic variance partitioning and genome-wide prediction with allele dosage information in autotetraploid potato
As one of the world's most important food crops, the potato (Solanum tuberosum L.) has
spurred innovation in autotetraploid genetics, including in the use of SNP arrays to …
spurred innovation in autotetraploid genetics, including in the use of SNP arrays to …
Genomic quantitative genetics to study evolution in the wild
Quantitative genetic theory provides a means of estimating the evolutionary potential of
natural populations. However, this approach was previously only feasible in systems where …
natural populations. However, this approach was previously only feasible in systems where …