A survey on applications of deep learning in microscopy image analysis
Advanced microscopy enables us to acquire quantities of time-lapse images to visualize the
dynamic characteristics of tissues, cells or molecules. Microscopy images typically vary in …
dynamic characteristics of tissues, cells or molecules. Microscopy images typically vary in …
[HTML][HTML] A bird's-eye view of deep learning in bioimage analysis
E Meijering - Computational and structural biotechnology journal, 2020 - Elsevier
Deep learning of artificial neural networks has become the de facto standard approach to
solving data analysis problems in virtually all fields of science and engineering. Also in …
solving data analysis problems in virtually all fields of science and engineering. Also in …
Deep learning enables fast and dense single-molecule localization with high accuracy
Single-molecule localization microscopy (SMLM) has had remarkable success in imaging
cellular structures with nanometer resolution, but standard analysis algorithms require …
cellular structures with nanometer resolution, but standard analysis algorithms require …
DeepSTORM3D: dense 3D localization microscopy and PSF design by deep learning
An outstanding challenge in single-molecule localization microscopy is the accurate and
precise localization of individual point emitters in three dimensions in densely labeled …
precise localization of individual point emitters in three dimensions in densely labeled …
Quantitative digital microscopy with deep learning
Video microscopy has a long history of providing insight and breakthroughs for a broad
range of disciplines, from physics to biology. Image analysis to extract quantitative …
range of disciplines, from physics to biology. Image analysis to extract quantitative …
Six-dimensional single-molecule imaging with isotropic resolution using a multi-view reflector microscope
Imaging of both the positions and orientations of single fluorophores, termed single-
molecule orientation-localization microscopy, is a powerful tool for the study of biochemical …
molecule orientation-localization microscopy, is a powerful tool for the study of biochemical …
Deep learning in single-molecule microscopy: fundamentals, caveats, and recent developments
Deep learning-based data analysis methods have gained considerable attention in all fields
of science over the last decade. In recent years, this trend has reached the single-molecule …
of science over the last decade. In recent years, this trend has reached the single-molecule …
Optofluidic imaging meets deep learning: from merging to emerging
Propelled by the striking advances in optical microscopy and deep learning (DL), the role of
imaging in lab-on-a-chip has dramatically been transformed from a silo inspection tool to a …
imaging in lab-on-a-chip has dramatically been transformed from a silo inspection tool to a …
Machine-learning-powered extraction of molecular diffusivity from single-molecule images for super-resolution map**
While critical to biological processes, molecular diffusion is difficult to quantify, and spatial
map** of local diffusivity is even more challenging. Here we report a machine-learning …
map** of local diffusivity is even more challenging. Here we report a machine-learning …
CycleGAN with a blur kernel for deconvolution microscopy: Optimal transport geometry
S Lim, H Park, SE Lee, S Chang… - IEEE Transactions on …, 2020 - ieeexplore.ieee.org
Deconvolution microscopy has been extensively used to improve the resolution of the wide-
field fluorescent microscopy, but the performance of classical approaches critically depends …
field fluorescent microscopy, but the performance of classical approaches critically depends …