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The application of long-read sequencing in clinical settings
Long-read DNA sequencing technologies have been rapidly evolving in recent years, and
their ability to assess large and complex regions of the genome makes them ideal for clinical …
their ability to assess large and complex regions of the genome makes them ideal for clinical …
Plant pangenomes for crop improvement, biodiversity and evolution
Plant genome sequences catalogue genes and the genetic elements that regulate their
expression. Such inventories further research aims as diverse as map** the molecular …
expression. Such inventories further research aims as diverse as map** the molecular …
Detection of mosaic and population-level structural variants with Sniffles2
Calling structural variations (SVs) is technically challenging, but using long reads remains
the most accurate way to identify complex genomic alterations. Here we present Sniffles2 …
the most accurate way to identify complex genomic alterations. Here we present Sniffles2 …
A GGC-repeat expansion in ZFHX3 encoding polyglycine causes spinocerebellar ataxia type 4 and impairs autophagy
Despite linkage to chromosome 16q in 1996, the mutation causing spinocerebellar ataxia
type 4 (SCA4), a late-onset sensory and cerebellar ataxia, remained unknown. Here, using …
type 4 (SCA4), a late-onset sensory and cerebellar ataxia, remained unknown. Here, using …
High-coverage nanopore sequencing of samples from the 1000 Genomes Project to build a comprehensive catalog of human genetic variation
JA Gustafson, SB Gibson, N Damaraju… - Genome …, 2024 - genome.cshlp.org
Fewer than half of individuals with a suspected Mendelian or monogenic condition receive a
precise molecular diagnosis after comprehensive clinical genetic testing. Improvements in …
precise molecular diagnosis after comprehensive clinical genetic testing. Improvements in …
Single-fly genome assemblies fill major phylogenomic gaps across the Drosophilidae Tree of Life
Long-read sequencing is driving rapid progress in genome assembly across all major
groups of life, including species of the family Drosophilidae, a longtime model system for …
groups of life, including species of the family Drosophilidae, a longtime model system for …
Comprehensive structural variant detection: from mosaic to population-level
Abstract Long-read Structural Variation (SV) calling remains a challenging but highly
accurate way to identify complex genomic rearrangements. Here, we present Sniffles2 …
accurate way to identify complex genomic rearrangements. Here, we present Sniffles2 …
Tradeoffs in alignment and assembly-based methods for structural variant detection with long-read sequencing data
Long-read sequencing offers long contiguous DNA fragments, facilitating diploid genome
assembly and structural variant (SV) detection. Efficient and robust algorithms for SV …
assembly and structural variant (SV) detection. Efficient and robust algorithms for SV …
Nanopore sequencing: Flourishing in its teenage years
Over the past decade, nanopore sequencing has experienced significant advancements
and changes, transitioning from an initially emerging technology to a significant instrument …
and changes, transitioning from an initially emerging technology to a significant instrument …
Nanopore sequencing of 1000 Genomes Project samples to build a comprehensive catalog of human genetic variation
JA Gustafson, SB Gibson, N Damaraju… - medRxiv, 2024 - pmc.ncbi.nlm.nih.gov
Less than half of individuals with a suspected Mendelian condition receive a precise
molecular diagnosis after comprehensive clinical genetic testing. Improvements in data …
molecular diagnosis after comprehensive clinical genetic testing. Improvements in data …