The molecular basis and disease relevance of non-homologous DNA end joining

B Zhao, E Rothenberg, DA Ramsden… - … Reviews Molecular Cell …, 2020 - nature.com
Non-homologous DNA end joining (NHEJ) is the predominant repair mechanism of any type
of DNA double-strand break (DSB) during most of the cell cycle and is essential for the …

Nonhomologous DNA end-joining for repair of DNA double-strand breaks

NR Pannunzio, G Watanabe, MR Lieber - Journal of Biological Chemistry, 2018 - ASBMB
Nonhomologous DNA end-joining (NHEJ) is the predominant double-strand break (DSB)
repair pathway throughout the cell cycle and accounts for nearly all DSB repair outside of …

Pervasive functional translation of noncanonical human open reading frames

J Chen, AD Brunner, JZ Cogan, JK Nuñez, AP Fields… - Science, 2020 - science.org
Ribosome profiling has revealed pervasive but largely uncharacterized translation outside of
canonical coding sequences (CDSs). In this work, we exploit a systematic CRISPR-based …

The dark proteome: translation from noncanonical open reading frames

BW Wright, Z Yi, JS Weissman, J Chen - Trends in Cell Biology, 2022 - cell.com
Omics-based technologies have revolutionized our understanding of the coding potential of
the genome. In particular, these studies revealed widespread unannotated open reading …

[HTML][HTML] A high-resolution map of human RNA translation

SP Chothani, E Adami, AA Widjaja, SR Langley… - Molecular cell, 2022 - cell.com
Translated small open reading frames (smORFs) can have important regulatory roles and
encode microproteins, yet their genome-wide identification has been challenging. We …

Classification and function of small open reading frames

JP Couso, P Patraquim - Nature reviews Molecular cell biology, 2017 - nature.com
Small open reading frames (smORFs) of 100 codons or fewer are usually—if arbitrarily—
excluded from proteome annotations. Despite this, the genomes of many metazoans …

Regulation of DNA repair pathway choice in S and G2 phases by the NHEJ inhibitor CYREN

N Arnoult, A Correia, J Ma, A Merlo, S Garcia-Gomez… - Nature, 2017 - nature.com
Classical non-homologous end joining (cNHEJ) and homologous recombination compete
for the repair of double-stranded DNA breaks during the cell cycle. Homologous …

Coding or noncoding, the converging concepts of RNAs

J Li, C Liu - Frontiers in genetics, 2019 - frontiersin.org
Technological advances over the past decade have unraveled the remarkable complexity of
RNA. The identification of small peptides encoded by long non-coding RNAs (lncRNAs) as …

A human microprotein that interacts with the mRNA decap** complex

NG D'Lima, J Ma, L Winkler, Q Chu, KH Loh… - Nature chemical …, 2017 - nature.com
Proteomic detection of non-annotated microproteins indicates the translation of hundreds of
small open reading frames (smORFs) in human cells, but whether these microproteins are …

Long non-coding RNAs as a source of new peptides

J Ruiz-Orera, X Messeguer, JA Subirana, MM Alba - elife, 2014 - elifesciences.org
Deep transcriptome sequencing has revealed the existence of many transcripts that lack
long or conserved open reading frames (ORFs) and which have been termed long non …