Maximally localized Wannier functions: Theory and applications

N Marzari, AA Mostofi, JR Yates, I Souza… - Reviews of Modern …, 2012 - APS
The electronic ground state of a periodic system is usually described in terms of extended
Bloch orbitals, but an alternative representation in terms of localized “Wannier functions” …

Quantum chemical methods for the prediction of energetic, physical, and spectroscopic properties of ionic liquids

EI Izgorodina, ZL Seeger, DLA Scarborough… - Chemical …, 2017 - ACS Publications
The accurate prediction of physicochemical properties of condensed systems is a
longstanding goal of theoretical (quantum) chemistry. Ionic liquids comprising entirely of …

[HTML][HTML] TRAVIS—A free analyzer for trajectories from molecular simulation

M Brehm, M Thomas, S Gehrke… - The Journal of chemical …, 2020 - pubs.aip.org
TRAVIS (“Trajectory Analyzer and Visualizer”) is a program package for post-processing and
analyzing trajectories from molecular dynamics and Monte Carlo simulations, mostly …

Computing vibrational spectra from ab initio molecular dynamics

M Thomas, M Brehm, R Fligg, P Vöhringer… - Physical Chemistry …, 2013 - pubs.rsc.org
We review several methods for the calculation of vibrational spectra from ab initio molecular
dynamics (AIMD) simulations and we present a new implementation in the trajectory …

The silica–water interface: how the silanols determine the surface acidity and modulate the water properties

M Sulpizi, MP Gaigeot, M Sprik - Journal of chemical theory and …, 2012 - ACS Publications
Silica is the most abundant metal oxide and the main component of the Earth's crust. Its
behavior in contact with water plays a critical role in a variety of geochemical and …

Vibrational spectroscopy by means of first‐principles molecular dynamics simulations

E Ditler, S Luber - Wiley Interdisciplinary Reviews …, 2022 - Wiley Online Library
Vibrational spectroscopy is one of the most important experimental techniques for the
characterization of molecules and materials. Spectroscopic signatures retrieved in …

Vibrational self-consistent field calculations for spectroscopy of biological molecules: new algorithmic developments and applications

TK Roy, RB Gerber - Physical Chemistry Chemical Physics, 2013 - pubs.rsc.org
This review describes the vibrational self-consistent field (VSCF) method and its other
variants for computing anharmonic vibrational spectroscopy of biological molecules. The …

Gas-phase infrared spectroscopy of neutral peptides: Insights from the far-IR and THz domain

S Bakels, MP Gaigeot, AM Rijs - Chemical reviews, 2020 - ACS Publications
Gas-phase, double resonance IR spectroscopy has proven to be an excellent approach to
obtain structural information on peptides ranging from single amino acids to large peptides …

Vibrational sum-frequency generation spectroscopy at the water/lipid interface: molecular dynamics simulation study

Y Nagata, S Mukamel - Journal of the American Chemical Society, 2010 - ACS Publications
The sum-frequency generation (SFG) spectrum from the water/[1, 2-dimyristoyl-sn-glycero-3-
phosphatidylcholine](DMPC) interface in the OH stretching mode region of water is …

Voronoi dipole moments for the simulation of bulk phase vibrational spectra

M Thomas, M Brehm, B Kirchner - Physical Chemistry Chemical …, 2015 - pubs.rsc.org
We present the Voronoi tessellation of electron density data to obtain molecular dipole
moments in bulk phase ab initio molecular dynamics simulations for the calculation of …