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Real-time time-dependent electronic structure theory
Real-time electronic structure methods provide an unprecedented view of electron dynamics
and ultrafast spectroscopy on the atto-and femtosecond time scale with vast potential to yield …
and ultrafast spectroscopy on the atto-and femtosecond time scale with vast potential to yield …
Spectroscopy in complex environments from QM–MM simulations
The applications of multiscale quantum–classical (QM–MM) approaches have shown an
extraordinary expansion and diversification in the last couple of decades. A great proportion …
extraordinary expansion and diversification in the last couple of decades. A great proportion …
Near UV-Visible electronic absorption originating from charged amino acids in a monomeric protein
Electronic absorption spectra of proteins are primarily characterized over the ultraviolet
region (185–320 nm) of the electromagnetic spectrum. While recent studies on peptide …
region (185–320 nm) of the electromagnetic spectrum. While recent studies on peptide …
How Large Should the QM Region Be in QM/MM Calculations? The Case of Catechol O-Methyltransferase
Hybrid quantum mechanical–molecular mechanical (QM/MM) simulations are widely used in
studies of enzymatic catalysis. Until recently, it has been cost prohibitive to determine the …
studies of enzymatic catalysis. Until recently, it has been cost prohibitive to determine the …
Charge transfer in time-dependent density functional theory
NT Maitra - Journal of Physics: Condensed Matter, 2017 - iopscience.iop.org
Charge transfer plays a crucial role in many processes of interest in physics, chemistry, and
bio-chemistry. In many applications the size of the systems involved calls for time-dependent …
bio-chemistry. In many applications the size of the systems involved calls for time-dependent …
State-targeted energy projection: A simple and robust approach to orbital relaxation of non-Aufbau self-consistent field solutions
Orbital optimization is crucial when using a non-Aufbau Slater determinant that involves
promotion of an electron from a (nominally) occupied molecular orbital to an unoccupied …
promotion of an electron from a (nominally) occupied molecular orbital to an unoccupied …
Requirements for an accurate dispersion-corrected density functional
Post-self-consistent dispersion corrections are now the norm when applying density-
functional theory to systems where non-covalent interactions play an important role …
functional theory to systems where non-covalent interactions play an important role …
Effect of the QM size, basis set, and polarization on QM/MM interaction energy decomposition analysis
Á Pérez-Barcia, G Cárdenas, JJ Nogueira… - Journal of Chemical …, 2023 - ACS Publications
Herein, an Energy Decomposition Analysis (EDA) scheme extended to the framework of
QM/MM calculations in the context of electrostatic embeddings (QM/MM-EDA) including …
QM/MM calculations in the context of electrostatic embeddings (QM/MM-EDA) including …
Modeling absorption spectra of molecules in solution
The presence of solvent tunes many properties of a molecule, such as its ground and
excited state geometry, dipole moment, excitation energy, and absorption spectrum …
excited state geometry, dipole moment, excitation energy, and absorption spectrum …
Systematic quantum mechanical region determination in QM/MM simulation
Hybrid quantum mechanical-molecular mechanical (QM/MM) simulations are widely used in
enzyme simulation. Over ten convergence studies of QM/MM methods have revealed over …
enzyme simulation. Over ten convergence studies of QM/MM methods have revealed over …