Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

RM Bowers, NC Kyrpides, R Stepanauskas… - Nature …, 2017 - nature.com
We present two standards developed by the Genomic Standards Consortium (GSC) for
reporting bacterial and archaeal genome sequences. Both are extensions of the Minimum …

Major new microbial groups expand diversity and alter our understanding of the tree of life

CJ Castelle, JF Banfield - Cell, 2018 - cell.com
The recent recovery of genomes for organisms from phyla with no isolated representative
(candidate phyla) via cultivation-independent genomics enabled delineation of major new …

DRAM for distilling microbial metabolism to automate the curation of microbiome function

M Shaffer, MA Borton, BB McGivern… - Nucleic acids …, 2020 - academic.oup.com
Microbial and viral communities transform the chemistry of Earth's ecosystems, yet the
specific reactions catalyzed by these biological engines are hard to decode due to the …

Biosynthetic capacity, metabolic variety and unusual biology in the CPR and DPANN radiations

CJ Castelle, CT Brown, K Anantharaman… - Nature Reviews …, 2018 - nature.com
Candidate phyla radiation (CPR) bacteria and DPANN (an acronym of the names of the first
included phyla) archaea are massive radiations of organisms that are widely distributed …

Ecology of the oral microbiome: beyond bacteria

JL Baker, B Bor, M Agnello, W Shi, X He - Trends in microbiology, 2017 - cell.com
Although great strides have been made in understanding the complex bacterial community
inhabiting the human oral cavity, for a variety of (mainly technical) reasons the ecological …

[HTML][HTML] A short history of RubisCO: the rise and fall (?) of Nature's predominant CO2 fixing enzyme

TJ Erb, J Zarzycki - Current opinion in biotechnology, 2018 - Elsevier
Highlights•RubisCO evolved into Nature's predominant CO 2-fixing enzyme in three distinct
steps.•RubisCO evolved from a non-CO 2-fixing ancestral enzyme into a true …

Expansive microbial metabolic versatility and biodiversity in dynamic Guaymas Basin hydrothermal sediments

N Dombrowski, AP Teske, BJ Baker - Nature communications, 2018 - nature.com
Abstract Microbes in Guaymas Basin (Gulf of California) hydrothermal sediments thrive on
hydrocarbons and sulfur and experience steep, fluctuating temperature and chemical …

Rubisco function, evolution, and engineering

N Prywes, NR Phillips, OT Tuck… - Annual review of …, 2023 - annualreviews.org
Carbon fixation is the process by which CO2 is converted from a gas into biomass. The
Calvin–Benson–Bassham cycle (CBB) is the dominant carbon-consuming pathway on …

The fate of organic carbon in marine sediments-New insights from recent data and analysis

DE LaRowe, S Arndt, JA Bradley, ER Estes… - Earth-Science …, 2020 - Elsevier
Organic carbon in marine sediments is a critical component of the global carbon cycle, and
its degradation influences a wide range of phenomena, including the magnitude of carbon …

[HTML][HTML] The bright side of microbial dark matter: lessons learned from the uncultivated majority

L Solden, K Lloyd, K Wrighton - Current opinion in microbiology, 2016 - Elsevier
Highlights•Recent discoveries from metagenomics and single cell genomics.•Metabolic
features of the uncultivated majority.•Success stories of cultivating microbial dark …