Named entity recognition and classification in historical documents: A survey

M Ehrmann, A Hamdi, EL Pontes, M Romanello… - ACM Computing …, 2023 - dl.acm.org
After decades of massive digitisation, an unprecedented number of historical documents are
available in digital format, along with their machine-readable texts. While this represents a …

A survey on recent advances in named entity recognition from deep learning models

V Yadav, S Bethard - arxiv preprint arxiv:1910.11470, 2019 - arxiv.org
Named Entity Recognition (NER) is a key component in NLP systems for question
answering, information retrieval, relation extraction, etc. NER systems have been studied …

[HTML][HTML] IL4I1 is a metabolic immune checkpoint that activates the AHR and promotes tumor progression

A Sadik, LFS Patterson, S Öztürk, SR Mohapatra… - Cell, 2020 - cell.com
Aryl hydrocarbon receptor (AHR) activation by tryptophan (Trp) catabolites enhances tumor
malignancy and suppresses anti-tumor immunity. The context specificity of AHR target …

Data-driven materials research enabled by natural language processing and information extraction

EA Olivetti, JM Cole, E Kim, O Kononova… - Applied Physics …, 2020 - pubs.aip.org
Given the emergence of data science and machine learning throughout all aspects of
society, but particularly in the scientific domain, there is increased importance placed on …

Deep learning with word embeddings improves biomedical named entity recognition

M Habibi, L Weber, M Neves, DL Wiegandt… - …, 2017 - academic.oup.com
Motivation Text mining has become an important tool for biomedical research. The most
fundamental text-mining task is the recognition of biomedical named entities (NER), such as …

Multilingual autoregressive entity linking

N De Cao, L Wu, K Popat, M Artetxe, N Goyal… - Transactions of the …, 2022 - direct.mit.edu
We present mGENRE, a sequence-to-sequence system for the Multilingual Entity Linking
(MEL) problem—the task of resolving language-specific mentions to a multilingual …

Translating cancer genomics into precision medicine with artificial intelligence: applications, challenges and future perspectives

J Xu, P Yang, S Xue, B Sharma, M Sanchez-Martin… - Human genetics, 2019 - Springer
In the field of cancer genomics, the broad availability of genetic information offered by next-
generation sequencing technologies and rapid growth in biomedical publication has led to …

[HTML][HTML] NCBI disease corpus: a resource for disease name recognition and concept normalization

RI Doğan, R Leaman, Z Lu - Journal of biomedical informatics, 2014 - Elsevier
Abstract Information encoded in natural language in biomedical literature publications is
only useful if efficient and reliable ways of accessing and analyzing that information are …

Pharmacovigilance from social media: mining adverse drug reaction mentions using sequence labeling with word embedding cluster features

A Nikfarjam, A Sarker, K O'connor… - Journal of the …, 2015 - academic.oup.com
Objective Social media is becoming increasingly popular as a platform for sharing personal
health-related information. This information can be utilized for public health monitoring tasks …

Named entity recognition and relation detection for biomedical information extraction

N Perera, M Dehmer, F Emmert-Streib - Frontiers in cell and …, 2020 - frontiersin.org
The number of scientific publications in the literature is steadily growing, containing our
knowledge in the biomedical, health, and clinical sciences. Since there is currently no …