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Three-dimensional genome architecture: players and mechanisms
A Pombo, N Dillon - Nature reviews Molecular cell biology, 2015 - nature.com
The different cell types of an organism share the same DNA, but during cell differentiation
their genomes undergo diverse structural and organizational changes that affect gene …
their genomes undergo diverse structural and organizational changes that affect gene …
Genome-wide map** and analysis of chromosome architecture
Chromosomes of eukaryotes adopt highly dynamic and complex hierarchical structures in
the nucleus. The three-dimensional (3D) organization of chromosomes profoundly affects …
the nucleus. The three-dimensional (3D) organization of chromosomes profoundly affects …
Promoter of lncRNA gene PVT1 is a tumor-suppressor DNA boundary element
Noncoding mutations in cancer genomes are frequent but challenging to interpret. PVT1
encodes an oncogenic lncRNA, but recurrent translocations and deletions in human cancers …
encodes an oncogenic lncRNA, but recurrent translocations and deletions in human cancers …
Transcription factors orchestrate dynamic interplay between genome topology and gene regulation during cell reprogramming
Chromosomal architecture is known to influence gene expression, yet its role in controlling
cell fate remains poorly understood. Reprogramming of somatic cells into pluripotent stem …
cell fate remains poorly understood. Reprogramming of somatic cells into pluripotent stem …
Cohesin and CTCF differentially affect chromatin architecture and gene expression in human cells
Recent studies of genome-wide chromatin interactions have revealed that the human
genome is partitioned into many self-associating topological domains. The boundary …
genome is partitioned into many self-associating topological domains. The boundary …
Obesity-associated variants within FTO form long-range functional connections with IRX3
Genome-wide association studies (GWAS) have reproducibly associated variants within
introns of FTO with increased risk for obesity and type 2 diabetes (T2D),,. Although the …
introns of FTO with increased risk for obesity and type 2 diabetes (T2D),,. Although the …
Enhancer release and retargeting activates disease-susceptibility genes
The functional engagement between an enhancer and its target promoter ensures precise
gene transcription. Understanding the basis of promoter choice by enhancers has important …
gene transcription. Understanding the basis of promoter choice by enhancers has important …
Genome-wide characterization of mammalian promoters with distal enhancer functions
Gene expression in mammals is precisely regulated by the combination of promoters and
gene-distal regulatory regions, known as enhancers. Several studies have suggested that …
gene-distal regulatory regions, known as enhancers. Several studies have suggested that …
Analysis of hundreds of cis-regulatory landscapes at high resolution in a single, high-throughput experiment
JR Hughes, N Roberts, S McGowan, D Hay… - Nature …, 2014 - nature.com
Gene expression during development and differentiation is regulated in a cell-and stage-
specific manner by complex networks of intergenic and intragenic cis-regulatory elements …
specific manner by complex networks of intergenic and intragenic cis-regulatory elements …