cfDNA methylome profiling for detection and subty** of small cell lung cancers

F Chemi, SP Pearce, A Clipson, SM Hill, AM Conway… - Nature cancer, 2022 - nature.com
Small cell lung cancer (SCLC) is characterized by morphologic, epigenetic and
transcriptomic heterogeneity. Subtypes based upon predominant transcription factor …

Sensitive tumour detection and classification using plasma cell-free DNA methylomes

SY Shen, R Singhania, G Fehringer, A Chakravarthy… - Nature, 2018 - nature.com
The use of liquid biopsies for cancer detection and management is rapidly gaining
prominence. Current methods for the detection of circulating tumour DNA involve …

Statistical methods for detecting differentially methylated loci and regions

MD Robinson, A Kahraman, CW Law, H Lindsay… - Frontiers in …, 2014 - frontiersin.org
DNA methylation, the reversible addition of methyl groups at CpG dinucleotides, represents
an important regulatory layer associated with gene expression. Changed methylation status …

Cell-free DNA-methylation-based methods and applications in oncology

F Galardi, F De Luca, D Romagnoli, C Biagioni… - Biomolecules, 2020 - mdpi.com
Liquid biopsy based on cell-free DNA (cfDNA) enables non-invasive dynamic assessment of
disease status in patients with cancer, both in the early and advanced settings. The analysis …

Detection of renal cell carcinoma using plasma and urine cell-free DNA methylomes

PV Nuzzo, JE Berchuck, K Korthauer, S Spisak… - Nature medicine, 2020 - nature.com
Improving early cancer detection has the potential to substantially reduce cancer-related
mortality. Cell-free methylated DNA immunoprecipitation and high-throughput sequencing …

DNA methylation on N6-adenine in C. elegans

EL Greer, MA Blanco, L Gu, E Sendinc, J Liu… - Cell, 2015 - cell.com
In mammalian cells, DNA methylation on the fifth position of cytosine (5mC) plays an
important role as an epigenetic mark. However, DNA methylation was considered to be …

Comprehensive analysis of DNA methylation data with RnBeads

Y Assenov, F Müller, P Lutsik, J Walter, T Lengauer… - Nature …, 2014 - nature.com
RnBeads is a software tool for large-scale analysis and interpretation of DNA methylation
data, providing a user-friendly analysis workflow that yields detailed hypertext reports …

Assessment of glyphosate induced epigenetic transgenerational inheritance of pathologies and sperm epimutations: generational toxicology

D Kubsad, EE Nilsson, SE King, I Sadler-Riggleman… - Scientific reports, 2019 - nature.com
Ancestral environmental exposures to a variety of factors and toxicants have been shown to
promote the epigenetic transgenerational inheritance of adult onset disease. One of the …

DNA methylation changes in plasticity genes accompany the formation and maintenance of memory

R Halder, M Hennion, RO Vidal, O Shomroni… - Nature …, 2016 - nature.com
The ability to form memories is a prerequisite for an organism's behavioral adaptation to
environmental changes. At the molecular level, the acquisition and maintenance of memory …

[HTML][HTML] Formation of memory assemblies through the DNA-sensing TLR9 pathway

V Jovasevic, EM Wood, A Cicvaric, H Zhang, Z Petrovic… - Nature, 2024 - nature.com
As hippocampal neurons respond to diverse types of information, a subset assembles into
microcircuits representing a memory. Those neurons typically undergo energy-intensive …