[HTML][HTML] Biomedical text mining and its applications in cancer research

F Zhu, P Patumcharoenpol, C Zhang, Y Yang… - Journal of biomedical …, 2013‏ - Elsevier
Cancer is a malignant disease that has caused millions of human deaths. Its study has a
long history of well over 100years. There have been an enormous number of publications on …

[HTML][HTML] Causal relationship extraction from biomedical text using deep neural models: A comprehensive survey

A Akkasi, MF Moens - Journal of biomedical informatics, 2021‏ - Elsevier
The identification of causal relationships between events or entities within biomedical texts
is of great importance for creating scientific knowledge bases and is also a fundamental …

A rule-based named-entity recognition method for knowledge extraction of evidence-based dietary recommendations

T Eftimov, B Koroušić Seljak, P Korošec - PloS one, 2017‏ - journals.plos.org
Evidence-based dietary information represented as unstructured text is a crucial information
that needs to be accessed in order to help dietitians follow the new knowledge arrives daily …

[PDF][PDF] Overview of BioNLP shared task 2013

C Nédellec, R Bossy, JD Kim, JJ Kim… - Proceedings of the …, 2013‏ - aclanthology.org
Abstract The BioNLP Shared Task 2013 is the third edition of the BioNLP Shared Task
series that is a community-wide effort to address fine-grained, structural information …

[HTML][HTML] BioC: a minimalist approach to interoperability for biomedical text processing

DC Comeau, R Islamaj Doğan, P Ciccarese… - Database, 2013‏ - academic.oup.com
A vast amount of scientific information is encoded in natural language text, and the quantity
of such text has become so great that it is no longer economically feasible to have a human …

Micropublications: a semantic model for claims, evidence, arguments and annotations in biomedical communications

T Clark, PN Ciccarese, CA Goble - Journal of biomedical semantics, 2014‏ - Springer
Background Scientific publications are documentary representations of defeasible
arguments, supported by data and repeatable methods. They are the essential mediating …

A review on computational systems biology of pathogen–host interactions

S Durmuş, T Çakır, A Özgür, R Guthke - Frontiers in microbiology, 2015‏ - frontiersin.org
Pathogens manipulate the cellular mechanisms of host organisms via pathogen–host
interactions (PHIs) in order to take advantage of the capabilities of host cells, leading to …

Biomedical relation extraction: from binary to complex

D Zhou, D Zhong, Y He - Computational and mathematical …, 2014‏ - Wiley Online Library
Biomedical relation extraction aims to uncover high‐quality relations from life science
literature with high accuracy and efficiency. Early biomedical relation extraction tasks …

Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011

S Pyysalo, T Ohta, R Rak, D Sullivan, C Mao… - BMC …, 2012‏ - Springer
We present the preparation, resources, results and analysis of three tasks of the BioNLP
Shared Task 2011: the main tasks on Infectious Diseases (ID) and Epigenetics and Post …

Chemu 2020: Natural language processing methods are effective for information extraction from chemical patents

J He, DQ Nguyen, SA Akhondi… - Frontiers in Research …, 2021‏ - frontiersin.org
Chemical patents represent a valuable source of information about new chemical
compounds, which is critical to the drug discovery process. Automated information extraction …