Visualization of biomolecular structures: State of the art revisited

B Kozlíková, M Krone, M Falk, N Lindow… - Computer Graphics …, 2017 - Wiley Online Library
Structural properties of molecules are of primary concern in many fields. This report provides
a comprehensive overview on techniques that have been developed in the fields of …

Interactive SPH simulation and rendering on the GPU

P Goswami, P Schlegel, B Solenthaler, R Pajarola - 2010 - zora.uzh.ch
In this paper we introduce a novel parallel and interactive SPH simulation and rendering
method on the GPU using CUDA which allows for high quality visualization. The crucial …

[PDF][PDF] Fast Visualization of Gaussian Density Surfaces for Molecular Dynamics and Particle System Trajectories.

M Krone, JE Stone, T Ertl, K Schulten - EuroVis (Short Papers), 2012 - diglib.eg.org
We present an efficient algorithm for computation of surface representations enabling
interactive visualization of large dynamic particle data sets. Our method is based on a GPU …

Visualization of biomolecular structures: State of the art

B Kozlikova, M Krone, M Falk, N Lindow, M Baaden… - 2015 - opus4.kobv.de
Structural properties of molecules are of primary concern in many fields. This report provides
a comprehensive overview on techniques that have been developed in the fields of …

Efficient high-quality volume rendering of SPH data

R Fraedrich, S Auer… - IEEE transactions on …, 2010 - ieeexplore.ieee.org
High quality volume rendering of SPH data requires a complex order-dependent resampling
of particle quantities along the view rays. In this paper we present an efficient approach to …

Interactive visualization of molecular surface dynamics

M Krone, K Bidmon, T Ertl - IEEE transactions on visualization …, 2009 - ieeexplore.ieee.org
Molecular dynamics simulations of proteins play a growing role in various fields such as
pharmaceutical, biochemical and medical research. Accordingly, the need for high quality …

A function-based approach to interactive high-precision volumetric design and fabrication

C Uchytil, D Storti - ACM Transactions on Graphics, 2023 - dl.acm.org
We present a novel function representation (F-Rep) based geometric modeling kernel tailor-
made to support computer aided design (CAD) and fabrication of high resolution volumetric …

Higher-order block-structured hex meshing of tubular structures

D Bošnjak, A Pepe, R Schussnig… - Engineering with …, 2024 - Springer
Numerical simulations of the cardiovascular system are growing in popularity due to the
increasing availability of computational power, and their proven contribution to the …

GPU-accelerated molecular visualization on petascale supercomputing platforms

JE Stone, KL Vandivort, K Schulten - Proceedings of the 8th International …, 2013 - dl.acm.org
Petascale supercomputers create new opportunities for the study of the structure and
function of large biomolecular complexes such as viruses and photosynthetic organelles …

Fast particle‐based visual simulation of ice melting

K Iwasaki, H Uchida, Y Dobashi… - Computer graphics …, 2010 - Wiley Online Library
The visual simulation of natural phenomena has been widely studied. Although several
methods have been proposed to simulate melting, the flows of meltwater drops on the …