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De novo protein design by deep network hallucination
There has been considerable recent progress in protein structure prediction using deep
neural networks to predict inter-residue distances from amino acid sequences,–. Here we …
neural networks to predict inter-residue distances from amino acid sequences,–. Here we …
Codon influence on protein expression in E. coli correlates with mRNA levels
Degeneracy in the genetic code, which enables a single protein to be encoded by a
multitude of synonymous gene sequences, has an important role in regulating protein …
multitude of synonymous gene sequences, has an important role in regulating protein …
Principles for designing ideal protein structures
Unlike random heteropolymers, natural proteins fold into unique ordered structures.
Understanding how these are encoded in amino-acid sequences is complicated by …
Understanding how these are encoded in amino-acid sequences is complicated by …
[PDF][PDF] Characterization of proteins by size-exclusion chromatography coupled to multi-angle light scattering (SEC-MALS)
Analytical size-exclusion chromatography (SEC), commonly used for the determination of
the molecular weight of proteins and protein-protein complexes in solution, is a relative …
the molecular weight of proteins and protein-protein complexes in solution, is a relative …
Determination of solution structures of proteins up to 40 kDa using CS-Rosetta with sparse NMR data from deuterated samples
We have developed an approach for determining NMR structures of proteins over 20 kDa
that utilizes sparse distance restraints obtained using transverse relaxation optimized …
that utilizes sparse distance restraints obtained using transverse relaxation optimized …
Principles for designing proteins with cavities formed by curved β sheets
Active sites and ligand-binding cavities in native proteins are often formed by curved β
sheets, and the ability to control β-sheet curvature would allow design of binding proteins …
sheets, and the ability to control β-sheet curvature would allow design of binding proteins …
[HTML][HTML] A high through-put platform for recombinant antibodies to folded proteins
Antibodies are key reagents in biology and medicine, but commercial sources are rarely
recombinant and thus do not provide a permanent and renewable resource. Here, we …
recombinant and thus do not provide a permanent and renewable resource. Here, we …
Mid-infrared chemical imaging of intracellular tau fibrils using fluorescence-guided computational photothermal microscopy
Amyloid proteins are associated with a broad spectrum of neurodegenerative diseases.
However, it remains a grand challenge to extract molecular structure information from …
However, it remains a grand challenge to extract molecular structure information from …
In-cell solid-state NMR studies of antimicrobial peptides
Antimicrobial peptides (AMPs) have attracted attention as alternatives to classic antibiotics
due to their expected limited pressure on bacterial resistance mechanisms. Yet, their modes …
due to their expected limited pressure on bacterial resistance mechanisms. Yet, their modes …
Aspirin's active metabolite salicylic acid targets high mobility group box 1 to modulate inflammatory responses
Salicylic acid (SA) and its derivatives have been used for millennia to reduce pain, fever and
inflammation. In addition, prophylactic use of acetylsalicylic acid, commonly known as …
inflammation. In addition, prophylactic use of acetylsalicylic acid, commonly known as …