Plant pan-genomes are the new reference
Recent years have seen a surge in plant genome sequencing projects and the comparison
of multiple related individuals. The high degree of genomic variation observed led to the …
of multiple related individuals. The high degree of genomic variation observed led to the …
Applications of multi-omics technologies for crop improvement
Multiple “omics” approaches have emerged as successful technologies for plant systems
over the last few decades. Advances in next-generation sequencing (NGS) have paved a …
over the last few decades. Advances in next-generation sequencing (NGS) have paved a …
[HTML][HTML] Pan-genome of wild and cultivated soybeans
Y Liu, H Du, P Li, Y Shen, H Peng, S Liu, GA Zhou… - Cell, 2020 - cell.com
Soybean is one of the most important vegetable oil and protein feed crops. To capture the
entire genomic diversity, it is needed to construct a complete high-quality pan-genome from …
entire genomic diversity, it is needed to construct a complete high-quality pan-genome from …
Eight high-quality genomes reveal pan-genome architecture and ecotype differentiation of Brassica napus
JM Song, Z Guan, J Hu, C Guo, Z Yang, S Wang, D Liu… - Nature plants, 2020 - nature.com
Rapeseed (Brassica napus) is the second most important oilseed crop in the world but the
genetic diversity underlying its massive phenotypic variations remains largely unexplored …
genetic diversity underlying its massive phenotypic variations remains largely unexplored …
Phased diploid genome assemblies and pan-genomes provide insights into the genetic history of apple domestication
Domestication of the apple was mainly driven by interspecific hybridization. In the present
study, we report the haplotype-resolved genomes of the cultivated apple (Malus domestica …
study, we report the haplotype-resolved genomes of the cultivated apple (Malus domestica …
The tomato pan-genome uncovers new genes and a rare allele regulating fruit flavor
Modern tomatoes have narrow genetic diversity limiting their improvement potential. We
present a tomato pan-genome constructed using genome sequences of 725 …
present a tomato pan-genome constructed using genome sequences of 725 …
The genome sequence of segmental allotetraploid peanut Arachis hypogaea
Like many other crops, the cultivated peanut (Arachis hypogaea L.) is of hybrid origin and
has a polyploid genome that contains essentially complete sets of chromosomes from two …
has a polyploid genome that contains essentially complete sets of chromosomes from two …
Genomic selection and genetic architecture of agronomic traits during modern rapeseed breeding
J Hu, B Chen, J Zhao, F Zhang, T **e, K Xu, G Gao… - Nature Genetics, 2022 - nature.com
Rapeseed (Brassica napus L.) is an important oil-producing crop for the world. Its
adaptation, yield and quality have been considerably improved in recent decades, but the …
adaptation, yield and quality have been considerably improved in recent decades, but the …
Plant NLR diversity: the known unknowns of pan-NLRomes
Plants and pathogens constantly adapt to each other. As a consequence, many members of
the plant immune system, and especially the intracellular nucleotide-binding site leucine …
the plant immune system, and especially the intracellular nucleotide-binding site leucine …
Massive gene presence-absence variation shapes an open pan-genome in the Mediterranean mussel
Abstract Background The Mediterranean mussel Mytilus galloprovincialis is an ecologically
and economically relevant edible marine bivalve, highly invasive and resilient to biotic and …
and economically relevant edible marine bivalve, highly invasive and resilient to biotic and …