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Tutorial: best practices and considerations for mass-spectrometry-based protein biomarker discovery and validation
Mass-spectrometry-based proteomic analysis is a powerful approach for discovering new
disease biomarkers. However, certain critical steps of study design such as cohort selection …
disease biomarkers. However, certain critical steps of study design such as cohort selection …
Recent advances in mass spectrometry based clinical proteomics: applications to cancer research
A Macklin, S Khan, T Kislinger - Clinical proteomics, 2020 - Springer
Cancer biomarkers have transformed current practices in the oncology clinic. Continued
discovery and validation are crucial for improving early diagnosis, risk stratification, and …
discovery and validation are crucial for improving early diagnosis, risk stratification, and …
Nanodroplet processing platform for deep and quantitative proteome profiling of 10–100 mammalian cells
Nanoscale or single-cell technologies are critical for biomedical applications. However,
current mass spectrometry (MS)-based proteomic approaches require samples comprising a …
current mass spectrometry (MS)-based proteomic approaches require samples comprising a …
Ultrasensitive proteome analysis using paramagnetic bead technology
In order to obtain a systems‐level understanding of a complex biological system, detailed
proteome information is essential. Despite great progress in proteomics technologies …
proteome information is essential. Despite great progress in proteomics technologies …
Proteomic analysis of single mammalian cells enabled by microfluidic nanodroplet sample preparation and ultrasensitive NanoLC‐MS
We report on the quantitative proteomic analysis of single mammalian cells. Fluorescence‐
activated cell sorting was employed to deposit cells into a newly developed nanodroplet …
activated cell sorting was employed to deposit cells into a newly developed nanodroplet …
Evaluation of FASP, SP3, and iST protocols for proteomic sample preparation in the low microgram range
M Sielaff, J Kuharev, T Bohn, J Hahlbrock… - Journal of proteome …, 2017 - ACS Publications
Efficient and reproducible sample preparation is a prerequisite for any robust and sensitive
quantitative bottom-up proteomics workflow. Here, we performed an independent …
quantitative bottom-up proteomics workflow. Here, we performed an independent …
Metabolic reprogramming toward oxidative phosphorylation identifies a therapeutic target for mantle cell lymphoma
Metabolic reprogramming is linked to cancer cell growth and proliferation, metastasis, and
therapeutic resistance in a multitude of cancers. Targeting dysregulated metabolic pathways …
therapeutic resistance in a multitude of cancers. Targeting dysregulated metabolic pathways …
Next-generation proteomics: towards an integrative view of proteome dynamics
Next-generation sequencing allows the analysis of genomes, including those representing
disease states. However, the causes of most disorders are multifactorial, and systems-level …
disease states. However, the causes of most disorders are multifactorial, and systems-level …
[HTML][HTML] Automated mass spectrometry imaging of over 2000 proteins from tissue sections at 100-μm spatial resolution
Biological tissues exhibit complex spatial heterogeneity that directs the functions of
multicellular organisms. Quantifying protein expression is essential for elucidating …
multicellular organisms. Quantifying protein expression is essential for elucidating …
Proteomic challenges: sample preparation techniques for microgram-quantity protein analysis from biological samples
P Feist, AB Hummon - International journal of molecular sciences, 2015 - mdpi.com
Proteins regulate many cellular functions and analyzing the presence and abundance of
proteins in biological samples are central focuses in proteomics. The discovery and …
proteins in biological samples are central focuses in proteomics. The discovery and …