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Neuron tracing from light microscopy images: automation, deep learning and bench testing
Motivation Large-scale neuronal morphologies are essential to neuronal ty**, connectivity
characterization and brain modeling. It is widely accepted that automation is critical to the …
characterization and brain modeling. It is widely accepted that automation is critical to the …
Digital reconstructions of neuronal morphology: three decades of research trends
M Halavi, KA Hamilton, R Parekh… - Frontiers in …, 2012 - frontiersin.org
The importance of neuronal morphology has been recognized from the early days of
neuroscience. Elucidating the functional roles of axonal and dendritic arbors in synaptic …
neuroscience. Elucidating the functional roles of axonal and dendritic arbors in synaptic …
BigNeuron: a resource to benchmark and predict performance of algorithms for automated tracing of neurons in light microscopy datasets
BigNeuron is an open community bench-testing platform with the goal of setting open
standards for accurate and fast automatic neuron tracing. We gathered a diverse set of …
standards for accurate and fast automatic neuron tracing. We gathered a diverse set of …
Nonlinear dendritic integration of sensory and motor input during an active sensing task
Active dendrites provide neurons with powerful processing capabilities. However, little is
known about the role of neuronal dendrites in behaviourally related circuit computations …
known about the role of neuronal dendrites in behaviourally related circuit computations …
neuTube 1.0: a new design for efficient neuron reconstruction software based on the SWC format
Brain circuit map** requires digital reconstruction of neuronal morphologies in
complicated networks. Despite recent advances in automatic algorithms, reconstruction of …
complicated networks. Despite recent advances in automatic algorithms, reconstruction of …
mGRASP enables map** mammalian synaptic connectivity with light microscopy
The GFP reconstitution across synaptic partners (GRASP) technique, based on functional
complementation between two nonfluorescent GFP fragments, can be used to detect the …
complementation between two nonfluorescent GFP fragments, can be used to detect the …
APP2: automatic tracing of 3D neuron morphology based on hierarchical pruning of a gray-weighted image distance-tree
H **ao, H Peng - Bioinformatics, 2013 - academic.oup.com
Motivation: Tracing of neuron morphology is an essential technique in computational
neuroscience. However, despite a number of existing methods, few open-source techniques …
neuroscience. However, despite a number of existing methods, few open-source techniques …
NeuroGPS-Tree: automatic reconstruction of large-scale neuronal populations with dense neurites
The reconstruction of neuronal populations, a key step in understanding neural circuits,
remains a challenge in the presence of densely packed neurites. Here we achieved …
remains a challenge in the presence of densely packed neurites. Here we achieved …
Neuromantic–from semi-manual to semi-automatic reconstruction of neuron morphology
DR Myatt, T Hadlington, GA Ascoli… - Frontiers in …, 2012 - frontiersin.org
The ability to create accurate geometric models of neuronal morphology is important for
understanding the role of shape in information processing. Despite a significant amount of …
understanding the role of shape in information processing. Despite a significant amount of …
Automatic 3D neuron tracing using all-path pruning
Motivation: Digital reconstruction, or tracing, of 3D neuron structures is critical toward
reverse engineering the wiring and functions of a brain. However, despite a number of …
reverse engineering the wiring and functions of a brain. However, despite a number of …