Enabling pathway design by multiplex experimentation and machine learning

AG Boob, J Chen, H Zhao - Metabolic Engineering, 2024 - Elsevier
The remarkable metabolic diversity observed in nature has provided a foundation for
sustainable production of a wide array of valuable molecules. However, transferring the …

CRISPR tools for engineering prokaryotic systems: recent advances and new applications

DA Burbano, C Kiattisewee, AV Karanjia… - Annual Review of …, 2024 - annualreviews.org
In the past decades, the broad selection of CRISPR-Cas systems has revolutionized
biotechnology by enabling multimodal genetic manipulation in diverse organisms. Rooted in …

A low-cost, thermostable, cell-free protein synthesis platform for on-demand production of conjugate vaccines

KF Warfel, A Williams, DA Wong, SE Sobol… - ACS synthetic …, 2022 - ACS Publications
Cell-free protein synthesis systems that can be lyophilized for long-term, non-refrigerated
storage and transportation have the potential to enable decentralized biomanufacturing …

Cell-free prototy** enables implementation of optimized reverse β-oxidation pathways in heterotrophic and autotrophic bacteria

B Vögeli, L Schulz, S Garg, K Tarasava… - Nature …, 2022 - nature.com
Carbon-negative synthesis of biochemical products has the potential to mitigate global CO2
emissions. An attractive route to do this is the reverse β-oxidation (r-BOX) pathway coupled …

Cell-free gene expression: methods and applications

AC Hunt, BJ Rasor, K Seki, HM Ekas, KF Warfel… - Chemical …, 2024 - ACS Publications
Cell-free gene expression (CFE) systems empower synthetic biologists to build biological
molecules and processes outside of living intact cells. The foundational principle is that …

[HTML][HTML] Optimizing microbial networks through metabolic bypasses

E Orsi, NJ Claassens, PI Nikel, SN Lindner - Biotechnology Advances, 2022 - Elsevier
Metabolism has long been considered as a relatively stiff set of biochemical reactions. This
somewhat outdated and dogmatic view has been challenged over the last years, as multiple …

Chloroplast cell-free systems from different plant species as a rapid prototy** platform

CV Böhm, R Inckemann, M Burgis… - ACS Synthetic …, 2024 - ACS Publications
Climate change poses a significant threat to global agriculture, necessitating innovative
solutions. Plant synthetic biology, particularly chloroplast engineering, holds promise as a …

Shifting redox reaction equilibria on demand using an orthogonal redox cofactor

D Aspacio, Y Zhang, Y Cui, E Luu, E King… - Nature Chemical …, 2024 - nature.com
Nature's two redox cofactors, nicotinamide adenine dinucleotide (NAD+) and nicotinamide
adenine dinucleotide phosphate (NADP+), are held at different reduction potentials, driving …

High-throughput regulatory part prototy** and analysis by cell-free protein synthesis and droplet microfluidics

R Gan, MD Cabezas, M Pan, H Zhang, G Hu… - ACS synthetic …, 2022 - ACS Publications
Engineering regulatory parts for improved performance in genetic programs has played a
pivotal role in the development of the synthetic biology cell programming toolbox. Here, we …

Establishing a versatile toolkit of flux enhanced strains and cell extracts for pathway prototy**

X Yi, BJ Rasor, N Boadi, K Louie, TR Northen… - Metabolic …, 2023 - Elsevier
Building and optimizing biosynthetic pathways in engineered cells holds promise to address
societal needs in energy, materials, and medicine, but it is often time-consuming. Cell-free …