[HTML][HTML] Computer-aided drug design in anti-cancer drug discovery: What have we learnt and what is the way forward?

O Iwaloye, PO Ottu, F Olawale, OO Babalola… - Informatics in Medicine …, 2023 - Elsevier
The escalating prevalence of cancer on a global scale, coupled with the inadequacies of
present-day therapies and the emergence of drug-resistant cancer strains, has necessitated …

A Tox21 approach to altered epigenetic landscapes: assessing epigenetic toxicity pathways leading to altered gene expression and oncogenic transformation in vitro

CL Parfett, D Desaulniers - International journal of molecular sciences, 2017 - mdpi.com
An emerging vision for toxicity testing in the 21st century foresees in vitro assays assuming
the leading role in testing for chemical hazards, including testing for carcinogenicity. Toxicity …

Critical role of lysine 134 methylation on histone H2AX for γ-H2AX production and DNA repair

K Sone, L Piao, M Nakakido, K Ueda… - Nature …, 2014 - nature.com
The presence of phosphorylated histone H2AX (γ-H2AX) is associated with the local
activation of DNA-damage repair pathways. Although γ-H2AX deregulation in cancer has …

Efficient automatic 3D segmentation of cell nuclei for high-content screening

M Marzec, A Piórkowski, A Gertych - BMC bioinformatics, 2022 - Springer
Background High-content screening (HCS) is a pre-clinical approach for the assessment of
drug efficacy. On modern platforms, it involves fluorescent image capture using three …

Rapid 3-D delineation of cell nuclei for high-content screening platforms

A Gertych, Z Ma, J Tajbakhsh… - Computers in biology …, 2016 - Elsevier
Abstract High-resolution three-dimensional (3-D) microscopy combined with multiplexing of
fluorescent labels allows high-content analysis of large numbers of cell nuclei. The full …

[HTML][HTML] Nuclear DNA methylation and chromatin condensation phenotypes are distinct between normally proliferating/aging, rapidly growing/immortal, and senescent …

JH Oh, A Gertych, J Tajbakhsh - Oncotarget, 2013 - ncbi.nlm.nih.gov
This study reports on probing the utility of in situ chromatin texture features such as nuclear
DNA methylation and chromatin condensation patterns—visualized by fluorescent staining …

Pharmacoepigenomics: A key determinant in resolving epigenomic parameters in pathogenesis and treatment response in complex diseases

M Banerjee - Pharmacogenomics, 2022 - Taylor & Francis
Pharmacoepigenomics is an emerging tool which complements pharmacogenetics in
personalized treatment. While pharmacogenetics refers to genetic variation in …

Dynamic heterogeneity of DNA methylation and hydroxymethylation in embryonic stem cell populations captured by single-cell 3D high-content analysis

J Tajbakhsh, D Stefanovski, G Tang… - Experimental cell …, 2015 - Elsevier
Cell-surface markers and transcription factors are being used in the assessment of stem cell
fate and therapeutic safety, but display significant variability in stem cell cultures. We …

Epigenetic biomarkers in liver cancer

KK Banaudha, M Verma - Cancer Epigenetics: Risk Assessment …, 2015 - Springer
Liver cancer (hepatocellular carcinoma or HCC) is a major cancer worldwide. Research in
this field is needed to identify biomarkers that can be used for early detection of the disease …

DNA methylation topology differentiates between normal and malignant in cell models, resected human tissues, and exfoliated sputum cells of lung epithelium

J Tajbakhsh, F Mortazavi, NK Gupta - Frontiers in Oncology, 2022 - frontiersin.org
Background Global DNA hypomethylation is a prominent feature of cancer cells including
lung cancer, that has not been widely explored towards cancer diagnosis. In this study we …