Disease resistance gene analogs (RGAs) in plants

MK Sekhwal, P Li, I Lam, X Wang, S Cloutier… - International journal of …, 2015 - mdpi.com
Plants have developed effective mechanisms to recognize and respond to infections caused
by pathogens. Plant resistance gene analogs (RGAs), as resistance (R) gene candidates …

Advances in Setaria genomics for genetic improvement of cereals and bioenergy grasses

M Muthamilarasan, M Prasad - Theoretical and applied genetics, 2015 - Springer
Key message Recent advances in Setaria genomics appear promising for genetic
improvement of cereals and biofuel crops towards providing multiple securities to the …

Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza

JC Stein, Y Yu, D Copetti, DJ Zwickl, L Zhang… - Nature …, 2018 - nature.com
The genus Oryza is a model system for the study of molecular evolution over time scales
ranging from a few thousand to 15 million years. Using 13 reference genomes spanning the …

Gene ontology consortium: going forward

Gene Ontology Consortium - Nucleic acids research, 2015 - academic.oup.com
Abstract The Gene Ontology (GO; http://www. geneontology. org) is a community-based
bioinformatics resource that supplies information about gene product function using …

Unveiling the complexity of the maize transcriptome by single-molecule long-read sequencing

B Wang, E Tseng, M Regulski, TA Clark, T Hon… - Nature …, 2016 - nature.com
Zea mays is an important genetic model for elucidating transcriptional networks.
Uncertainties about the complete structure of mRNA transcripts limit the progress of research …

Expression Atlas update—an integrated database of gene and protein expression in humans, animals and plants

R Petryszak, M Keays, YA Tang… - Nucleic acids …, 2016 - academic.oup.com
Abstract Expression Atlas (http://www. ebi. ac. uk/gxa) provides information about gene and
protein expression in animal and plant samples of different cell types, organism parts …

Ensembl comparative genomics resources

J Herrero, M Muffato, K Beal, S Fitzgerald, L Gordon… - Database, 2016 - academic.oup.com
Evolution provides the unifying framework with which to understand biology. The coherent
investigation of genic and genomic data often requires comparative genomics analyses …

Genome-wide prediction of metabolic enzymes, pathways, and gene clusters in plants

P Schläpfer, P Zhang, C Wang, T Kim, M Banf… - Plant …, 2017 - academic.oup.com
Plant metabolism underpins many traits of ecological and agronomic importance. Plants
produce numerous compounds to cope with their environments but the biosynthetic …

Ensembl Genomes 2016: more genomes, more complexity

PJ Kersey, JE Allen, I Armean, S Boddu… - Nucleic acids …, 2016 - academic.oup.com
Abstract Ensembl Genomes (http://www. ensemblgenomes. org) is an integrating resource
for genome-scale data from non-vertebrate species, complementing the resources for …

Ensembl plants: integrating tools for visualizing, mining, and analyzing plant genomics data

D Bolser, DM Staines, E Pritchard, P Kersey - … bioinformatics: Methods and …, 2016 - Springer
Abstract Ensembl Plants (http://plants. ensembl. org) is an integrative resource presenting
genome-scale information for a growing number of sequenced plant species (currently 33) …