Tools for sequence-based miRNA target prediction: what to choose?
MicroRNAs (miRNAs) are defined as small non-coding RNAs~ 22 nt in length. They regulate
gene expression at a post-transcriptional level through complementary base pairing with the …
gene expression at a post-transcriptional level through complementary base pairing with the …
miRNA targets: from prediction tools to experimental validation
G Riolo, S Cantara, C Marzocchi, C Ricci - Methods and protocols, 2020 - mdpi.com
MicroRNAs (miRNAs) are post-transcriptional regulators of gene expression in both animals
and plants. By pairing to microRNA responsive elements (mREs) on target mRNAs, miRNAs …
and plants. By pairing to microRNA responsive elements (mREs) on target mRNAs, miRNAs …
miRBase: from microRNA sequences to function
A Kozomara, M Birgaoanu… - Nucleic acids …, 2019 - academic.oup.com
Abstract miRBase catalogs, names and distributes microRNA gene sequences. The latest
release of miRBase (v22) contains microRNA sequences from 271 organisms: 38 589 …
release of miRBase (v22) contains microRNA sequences from 271 organisms: 38 589 …
The biochemical basis of microRNA targeting efficacy
INTRODUCTION MicroRNAs (miRNAs) are short RNAs that guide repression of mRNA
targets. Each miRNA associates with an Argonaute (AGO) protein to form a complex in …
targets. Each miRNA associates with an Argonaute (AGO) protein to form a complex in …
DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions
Abstract DIANA-TarBase v8 (http://www. microrna. gr/tarbase) is a reference database
devoted to the indexing of experimentally supported microRNA (miRNA) targets. Its eighth …
devoted to the indexing of experimentally supported microRNA (miRNA) targets. Its eighth …
DIANA-miRPath v3. 0: deciphering microRNA function with experimental support
The functional characterization of miRNAs is still an open challenge. Here, we present
DIANA-miRPath v3. 0 (http://www. microrna. gr/miRPathv3) an online software suite …
DIANA-miRPath v3. 0 (http://www. microrna. gr/miRPathv3) an online software suite …
Analyzing miRNA–lncRNA interactions
Long noncoding RNAs (lncRNAs) are noncoding transcripts usually longer than 200 nts that
have recently emerged as one of the largest and significantly diverse RNA families. The …
have recently emerged as one of the largest and significantly diverse RNA families. The …
DIANA-TarBase v7. 0: indexing more than half a million experimentally supported miRNA: mRNA interactions
Abstract microRNAs (miRNAs) are short non-coding RNA species, which act as potent gene
expression regulators. Accurate identification of miRNA targets is crucial to understanding …
expression regulators. Accurate identification of miRNA targets is crucial to understanding …
DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts
Abstract microRNAs (miRNAs) are short non-coding RNAs (ncRNAs) that act as post-
transcriptional regulators of coding gene expression. Long non-coding RNAs (lncRNAs) …
transcriptional regulators of coding gene expression. Long non-coding RNAs (lncRNAs) …
[HTML][HTML] Altered microRNA profiles in cerebrospinal fluid exosome in Parkinson disease and Alzheimer disease
YX Gui, H Liu, LS Zhang, W Lv, XY Hu - Oncotarget, 2015 - ncbi.nlm.nih.gov
The differential diagnosis of Parkinson's diseases (PD) is challenging, especially in the early
stages of the disease. We developed a microRNA profiling strategy for exosomal miRNAs …
stages of the disease. We developed a microRNA profiling strategy for exosomal miRNAs …