Adaptive immune receptor repertoire analysis

V Mhanna, H Bashour, K Lê Quý, P Barennes… - Nature Reviews …, 2024 - nature.com
B cell and T cell receptor repertoires compose the adaptive immune receptor repertoire
(AIRR) of an individual. The AIRR is a unique collection of antigen-specific receptors that …

Computational strategies for dissecting the high-dimensional complexity of adaptive immune repertoires

E Miho, A Yermanos, CR Weber, CT Berger… - Frontiers in …, 2018 - frontiersin.org
The adaptive immune system recognizes antigens via an immense array of antigen-binding
antibodies and T-cell receptors, the immune repertoire. The interrogation of immune …

[HTML][HTML] Slow delivery immunization enhances HIV neutralizing antibody and germinal center responses via modulation of immunodominance

KM Cirelli, DG Carnathan, B Nogal, JT Martin… - Cell, 2019 - cell.com
Conventional immunization strategies will likely be insufficient for the development of a
broadly neutralizing antibody (bnAb) vaccine for HIV or other difficult pathogens because of …

A variant-proof SARS-CoV-2 vaccine targeting HR1 domain in S2 subunit of spike protein

W Pang, Y Lu, YB Zhao, F Shen, CF Fan, Q Wang… - Cell Research, 2022 - nature.com
The emerging SARS-CoV-2 variants, commonly with many mutations in S1 subunit of spike
(S) protein are weakening the efficacy of the current vaccines and antibody therapeutics …

Genetic variation in the immunoglobulin heavy chain locus shapes the human antibody repertoire

OL Rodriguez, Y Safonova, CA Silver, K Shields… - Nature …, 2023 - nature.com
Variation in the antibody response has been linked to differential outcomes in disease, and
suboptimal vaccine and therapeutic responsiveness, the determinants of which have not …

IgA function in relation to the intestinal microbiota

AJ Macpherson, B Yilmaz, JP Limenitakis… - Annual review of …, 2018 - annualreviews.org
IgA is the dominant immunoglobulin isotype produced in mammals, largely secreted across
the intestinal mucosal surface. Although induction of IgA has been a hallmark feature of …

High-quality library preparation for NGS-based immunoglobulin germline gene inference and repertoire expression analysis

N Vázquez Bernat, M Corcoran, U Hardt… - Frontiers in …, 2019 - frontiersin.org
Next generation sequencing (NGS) of immunoglobulin (Ig) repertoires (Rep-seq) enables
examination of the adaptive immune system at an unprecedented level. Applications include …

Rapid isolation and immune profiling of SARS-CoV-2 specific memory B cell in convalescent COVID-19 patients via LIBRA-seq

B He, S Liu, Y Wang, M Xu, W Cai, J Liu… - Signal transduction and …, 2021 - nature.com
B cell response plays a critical role against SARS-CoV-2 infection. However, little is known
about the diversity and frequency of the paired SARS-CoV-2 antigen-specific BCR repertoire …

B cells engineered to express pathogen-specific antibodies protect against infection

HF Moffett, CK Harms, KS Fitzpatrick, MR Tooley… - Science …, 2019 - science.org
Effective vaccines inducing lifelong protection against many important infections such as
respiratory syncytial virus (RSV), HIV, influenza virus, and Epstein-Barr virus (EBV) are not …

[HTML][HTML] Mining adaptive immune receptor repertoires for biological and clinical information using machine learning

V Greiff, G Yaari, LG Cowell - Current Opinion in Systems Biology, 2020 - Elsevier
The adaptive immune system stores invaluable information about current and past immune
responses and may serve as an ultrasensitive biosensor. Given the immune system's critical …