Perspectives on current approaches to virtual screening in drug discovery

I Muegge, J Bentzien, Y Ge - Expert Opinion on Drug Discovery, 2024 - Taylor & Francis
Introduction For the past two decades, virtual screening (VS) has been an efficient hit finding
approach for drug discovery. Today, billions of commercially accessible compounds are …

Efficient generation of protein pockets with PocketGen

Z Zhang, WX Shen, Q Liu, M Zitnik - Nature Machine Intelligence, 2024 - nature.com
Designing protein-binding proteins is critical for drug discovery. However, artificial-
intelligence-based design of such proteins is challenging due to the complexity of protein …

Targeting ERK-MYD88 interaction leads to ERK dysregulation and immunogenic cancer cell death

F Virard, S Giraud, M Bonnet, L Magadoux… - Nature …, 2024 - nature.com
The quest for targeted therapies is critical in the battle against cancer. The RAS/MAP kinase
pathway is frequently implicated in neoplasia, with ERK playing a crucial role as the most …

Allosteric inhibition of NMDA receptors by low dose ketamine

JA Abbott, H Wen, B Liu, SS Gupta, GJ Iacobucci… - Molecular …, 2024 - nature.com
Ketamine, a general anesthetic, has rapid and sustained antidepressant effects when
administered at lower doses. Anesthetic levels of ketamine reduce excitatory transmission …

Fusing sequence and structural knowledge by heterogeneous models to accurately and interpretively predict drug–target affinity

X Zeng, KY Zhong, B Jiang, Y Li - Molecules, 2023 - mdpi.com
Drug–target affinity (DTA) prediction is crucial for understanding molecular interactions and
aiding drug discovery and development. While various computational methods have been …

Synthesis of Pyrrolo[3,4-b]pyridin-5-ones via Ugi–Zhu Reaction and In Vitro–In Silico Studies against Breast Carcinoma

I Morales-Salazar, CE Garduño-Albino… - Pharmaceuticals, 2023 - mdpi.com
An Ugi–Zhu three-component reaction (UZ-3CR) coupled in a one-pot manner to a cascade
process (N-acylation/aza Diels–Alder cycloaddition/decarboxylation/dehydration) was …

Quantum Mechanical Analysis of newly synthesized HIV-1 protease inhibitors: evaluation of wild-type and resistant strain binding interactions

GVR Silva, KAR Reiniger… - Physical Chemistry …, 2024 - pubs.rsc.org
Inhibition of HIV-1 protease is a cornerstone of antiretroviral therapy. However, the notorious
ability of HIV-1 to develop resistance to protease inhibitors (PIs), particularly darunavir …

Elucidation of anti-human melanoma and anti-aging mechanisms of compounds from green seaweed Caulerpa racemosa

D Wicaksono, NA Taslim, V Lau, RA Syahputra… - Scientific Reports, 2024 - nature.com
Human melanoma is linked with aging-related disorders, prompting interest in the
development of functional foods derived from natural ingredients to mitigate its incidence …

Exploring optimal drug targets through subtractive proteomics analysis and pangenomic insights for tailored drug design in tuberculosis

MF Khan, A Ali, HM Rehman, S Noor Khan… - Scientific Reports, 2024 - nature.com
Tuberculosis (TB), caused by Mycobacterium tuberculosis, ranks among the top causes of
global human mortality, as reported by the World Health Organization's 2022 TB report. The …

Discovery of Novel 1-Phenylpiperidine Urea-Containing Derivatives Inhibiting β-Catenin/BCL9 Interaction and Exerting Antitumor Efficacy through the Activation of …

W Zhu, C Liu, K **, A Li, L Shen, Y Li… - Journal of Medicinal …, 2024 - ACS Publications
Aberrant activation of the Wnt/β-catenin signaling is associated with tumor development, and
blocking β-catenin/BCL9 is a novel strategy for oncogenic Wnt/β-catenin signaling. Herein …