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Genetic and non-genetic clonal diversity in cancer evolution
The observation and analysis of intra-tumour heterogeneity (ITH), particularly in genomic
studies, has advanced our understanding of the evolutionary forces that shape cancer …
studies, has advanced our understanding of the evolutionary forces that shape cancer …
Enhancers in disease: molecular basis and emerging treatment strategies
Enhancers are genomic sequences that play a key role in regulating tissue-specific gene
expression levels. An increasing number of diseases are linked to impaired enhancer …
expression levels. An increasing number of diseases are linked to impaired enhancer …
Pan-cancer analysis of whole genomes
Nature, 2020 - nature.com
Cancer is driven by genetic change, and the advent of massively parallel sequencing has
enabled systematic documentation of this variation at the whole-genome scale,–. Here we …
enabled systematic documentation of this variation at the whole-genome scale,–. Here we …
The genomic and transcriptional landscape of primary central nervous system lymphoma
Primary lymphomas of the central nervous system (PCNSL) are mainly diffuse large B-cell
lymphomas (DLBCLs) confined to the central nervous system (CNS). Molecular drivers of …
lymphomas (DLBCLs) confined to the central nervous system (CNS). Molecular drivers of …
Enhancer–promoter specificity in gene transcription: molecular mechanisms and disease associations
MJ Friedman, T Wagner, H Lee… - … & Molecular Medicine, 2024 - nature.com
Although often located at a distance from their target gene promoters, enhancers are the
primary genomic determinants of temporal and spatial transcriptional specificity in …
primary genomic determinants of temporal and spatial transcriptional specificity in …
Whole-genome sequencing of acral melanoma reveals genomic complexity and diversity
To increase understanding of the genomic landscape of acral melanoma, a rare form of
melanoma occurring on palms, soles or nail beds, whole genome sequencing of 87 tumors …
melanoma occurring on palms, soles or nail beds, whole genome sequencing of 87 tumors …
Global impact of somatic structural variation on the cancer proteome
F Chen, Y Zhang, DS Chandrashekar… - Nature …, 2023 - nature.com
Both proteome and transcriptome data can help assess the relevance of non-coding somatic
mutations in cancer. Here, we combine mass spectrometry-based proteomics data with …
mutations in cancer. Here, we combine mass spectrometry-based proteomics data with …
Global map** of cancers: The Cancer Genome Atlas and beyond
Cancer genomes have been explored from the early 2000s through massive exome
sequencing efforts, leading to the publication of The Cancer Genome Atlas in 2013 …
sequencing efforts, leading to the publication of The Cancer Genome Atlas in 2013 …
Structural variant detection in cancer genomes: computational challenges and perspectives for precision oncology
Cancer is generally characterized by acquired genomic aberrations in a broad spectrum of
types and sizes, ranging from single nucleotide variants to structural variants (SVs). At least …
types and sizes, ranging from single nucleotide variants to structural variants (SVs). At least …
[HTML][HTML] Cooperation between melanoma cell states promotes metastasis through heterotypic cluster formation
Melanomas can have multiple coexisting cell states, including proliferative (PRO) versus
invasive (INV) subpopulations that represent a" go or grow" trade-off; however, how these …
invasive (INV) subpopulations that represent a" go or grow" trade-off; however, how these …