[HTML][HTML] An introduction to advanced targeted acquisition methods

M van Bentum, M Selbach - Molecular & Cellular Proteomics, 2021 - Elsevier
Targeted proteomics via selected reaction monitoring (SRM) or parallel reaction monitoring
(PRM) enables fast and sensitive detection of a preselected set of target peptides. However …

Instrumentation at the leading edge of proteomics

TM Peters-Clarke, JJ Coon, NM Riley - Analytical Chemistry, 2024 - ACS Publications
The proteome, or collection of proteoforms expressed in a biological system, is dynamic and
heterogeneous. As our appreciation for the complexity of the proteome has evolved, so have …

Hybrid-DIA: intelligent data acquisition integrates targeted and discovery proteomics to analyze phospho-signaling in single spheroids

A Martínez-Val, K Fort, C Koenig… - Nature …, 2023 - nature.com
Achieving sufficient coverage of regulatory phosphorylation sites by mass spectrometry (MS)-
based phosphoproteomics for signaling pathway reconstitution is challenging, especially …

Fast and deep phosphoproteome analysis with the Orbitrap Astral mass spectrometer

NM Lancaster, P Sinitcyn, P Forny… - Nature …, 2024 - nature.com
Owing to its roles in cellular signal transduction, protein phosphorylation plays critical roles
in myriad cell processes. That said, detecting and quantifying protein phosphorylation has …

Phosphoproteomics: a valuable tool for uncovering molecular signaling in cancer cells

JS Gerritsen, FM White - Expert review of proteomics, 2021 - Taylor & Francis
Introduction Many pathologies, including cancer, have been associated with aberrant
phosphorylation-mediated signaling networks that drive altered cell proliferation, migration …

[HTML][HTML] Recent advances in kinase signaling network profiling by mass spectrometry

G Franciosa, M Locard-Paulet, LJ Jensen… - Current Opinion in …, 2023 - Elsevier
Mass spectrometry-based phosphoproteomics is currently the leading methodology for the
study of global kinase signaling. The scientific community is continuously releasing …

Automated proteomic sample preparation: The key component for high throughput and quantitative mass spectrometry analysis

Q Fu, CI Murray, OA Karpov… - Mass Spectrometry …, 2023 - Wiley Online Library
Sample preparation for mass spectrometry‐based proteomics has many tedious and time‐
consuming steps that can introduce analytical errors. In particular, the steps around the …

Recent progress in quantitative phosphoproteomics

K Zittlau, P Nashier, C Cavarischia-Rega… - Expert Review of …, 2023 - Taylor & Francis
Introduction Protein phosphorylation is a critical post-translational modification involved in
the regulation of numerous cellular processes from signal transduction to modulation of …

Obtaining complete human proteomes

A Martinez-Val, UH Guzmán… - Annual review of …, 2022 - annualreviews.org
Proteins are the molecular effectors of the information encoded in the genome. Proteomics
aims at understanding the molecular functions of proteins in their biological context. In …

Absolute quantification of tumor antigens using embedded MHC-I isotopologue calibrants

LE Stopfer, AS Gajadhar, B Patel, S Gallien… - Proceedings of the …, 2021 - pnas.org
Absolute quantification measurements (copies per cell) of peptide major histocompatibility
complex (pMHC) antigens are necessary to inform targeted immunotherapy drug design; …