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[HTML][HTML] An introduction to advanced targeted acquisition methods
M van Bentum, M Selbach - Molecular & Cellular Proteomics, 2021 - Elsevier
Targeted proteomics via selected reaction monitoring (SRM) or parallel reaction monitoring
(PRM) enables fast and sensitive detection of a preselected set of target peptides. However …
(PRM) enables fast and sensitive detection of a preselected set of target peptides. However …
Instrumentation at the leading edge of proteomics
The proteome, or collection of proteoforms expressed in a biological system, is dynamic and
heterogeneous. As our appreciation for the complexity of the proteome has evolved, so have …
heterogeneous. As our appreciation for the complexity of the proteome has evolved, so have …
Hybrid-DIA: intelligent data acquisition integrates targeted and discovery proteomics to analyze phospho-signaling in single spheroids
Achieving sufficient coverage of regulatory phosphorylation sites by mass spectrometry (MS)-
based phosphoproteomics for signaling pathway reconstitution is challenging, especially …
based phosphoproteomics for signaling pathway reconstitution is challenging, especially …
Fast and deep phosphoproteome analysis with the Orbitrap Astral mass spectrometer
Owing to its roles in cellular signal transduction, protein phosphorylation plays critical roles
in myriad cell processes. That said, detecting and quantifying protein phosphorylation has …
in myriad cell processes. That said, detecting and quantifying protein phosphorylation has …
Phosphoproteomics: a valuable tool for uncovering molecular signaling in cancer cells
JS Gerritsen, FM White - Expert review of proteomics, 2021 - Taylor & Francis
Introduction Many pathologies, including cancer, have been associated with aberrant
phosphorylation-mediated signaling networks that drive altered cell proliferation, migration …
phosphorylation-mediated signaling networks that drive altered cell proliferation, migration …
[HTML][HTML] Recent advances in kinase signaling network profiling by mass spectrometry
Mass spectrometry-based phosphoproteomics is currently the leading methodology for the
study of global kinase signaling. The scientific community is continuously releasing …
study of global kinase signaling. The scientific community is continuously releasing …
Automated proteomic sample preparation: The key component for high throughput and quantitative mass spectrometry analysis
Sample preparation for mass spectrometry‐based proteomics has many tedious and time‐
consuming steps that can introduce analytical errors. In particular, the steps around the …
consuming steps that can introduce analytical errors. In particular, the steps around the …
Recent progress in quantitative phosphoproteomics
K Zittlau, P Nashier, C Cavarischia-Rega… - Expert Review of …, 2023 - Taylor & Francis
Introduction Protein phosphorylation is a critical post-translational modification involved in
the regulation of numerous cellular processes from signal transduction to modulation of …
the regulation of numerous cellular processes from signal transduction to modulation of …
Obtaining complete human proteomes
A Martinez-Val, UH Guzmán… - Annual review of …, 2022 - annualreviews.org
Proteins are the molecular effectors of the information encoded in the genome. Proteomics
aims at understanding the molecular functions of proteins in their biological context. In …
aims at understanding the molecular functions of proteins in their biological context. In …
Absolute quantification of tumor antigens using embedded MHC-I isotopologue calibrants
LE Stopfer, AS Gajadhar, B Patel, S Gallien… - Proceedings of the …, 2021 - pnas.org
Absolute quantification measurements (copies per cell) of peptide major histocompatibility
complex (pMHC) antigens are necessary to inform targeted immunotherapy drug design; …
complex (pMHC) antigens are necessary to inform targeted immunotherapy drug design; …