TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools

C Monat, S Padmarasu, T Lux, T Wicker, H Gundlach… - Genome biology, 2019 - Springer
Chromosome-scale genome sequence assemblies underpin pan-genomic studies. Recent
genome assembly efforts in the large-genome Triticeae crops wheat and barley have relied …

Plant reactome and PubChem: the plant pathway and (Bio) Chemical Entity Knowledgebases

P Gupta, S Naithani, J Preece, S Kim, T Cheng… - … : Methods and Protocols, 2022 - Springer
Abstract Plant Reactome (https://plantreactome. gramene. org) and PubChem
(https://pubchem. ncbi. nlm. nih. gov) are two reference data portals and resources for …

[HTML][HTML] Tools for building de novo transcriptome assembly

M Geniza, P Jaiswal - Current Plant Biology, 2017 - Elsevier
The availability of RNA-Seq method allows researchers to capture the spatial or temporal
profile of transcriptomes from various types of biological samples. The transcriptome data …

Chia (Salvia hispanica) Gene Expression Atlas Elucidates Dynamic Spatio-Temporal Changes Associated With Plant Growth and Development

P Gupta, M Geniza, S Naithani, JL Phillips… - Frontiers in Plant …, 2021 - frontiersin.org
Chia (Salvia hispanica L.), now a popular superfood and a pseudocereal, is one of the
richest sources of dietary nutrients such as protein, fiber, and polyunsaturated fatty acids …

Transcriptomic analysis of the C3-CAM transition in Cistanthe longiscapa, a drought tolerant plant in the Atacama Desert

PG Ossa, AA Moreno, D Orellana, M Toro… - bioRxiv, 2022 - biorxiv.org
One of the most outstanding plant species during the blooming of the Atacama Desert is the
annual plant Cistanthe longiscapa. This plant can perform CAM photosynthesis, but the …

Evolutionary Development Study of Firebrat (Thermobia domestica)

L Cantu Jr - 2021 - search.proquest.com
As most evolutionary development studies regarding wing origin take place using insects
taxonomically closer to model organism, Drosophila melanogaster, there is a need of …