Control of DNA replication timing in the 3D genome

C Marchal, J Sima, DM Gilbert - Nature Reviews Molecular Cell Biology, 2019 - nature.com
The 3D organization of mammalian chromatin was described more than 30 years ago by
visualizing sites of DNA synthesis at different times during the S phase of the cell cycle …

Replication timing and transcriptional control: beyond cause and effect—part III

JC Rivera-Mulia, DM Gilbert - Current opinion in cell biology, 2016 - Elsevier
DNA replication is essential for faithful transmission of genetic information and is intimately
tied to chromosome structure and function. Genome duplication occurs in a defined temporal …

Dynamic changes in replication timing and gene expression during lineage specification of human pluripotent stem cells

JC Rivera-Mulia, Q Buckley, T Sasaki… - Genome …, 2015 - genome.cshlp.org
Duplication of the genome in mammalian cells occurs in a defined temporal order referred to
as its replication-timing (RT) program. RT changes dynamically during development …

Kronos scRT: a uniform framework for single-cell replication timing analysis

S Gnan, JM Josephides, X Wu, M Spagnuolo… - Nature …, 2022 - nature.com
Mammalian genomes are replicated in a cell type-specific order and in coordination with
transcription and chromatin organization. Currently, single-cell replication studies require …

[HTML][HTML] Loss of lamin B1 results in prolongation of S phase and decondensation of chromosome territories

J Camps, D Wangsa, M Falke, M Brown… - The FASEB …, 2014 - pmc.ncbi.nlm.nih.gov
Nuclear lamin B1 (LMNB1) constitutes one of the major structural proteins in the lamina
mesh. We silenced the expression of LMNB1 by RNA interference in the colon cancer cell …

Human genome replication proceeds through four chromatin states

H Julienne, A Zoufir, B Audit… - PLoS computational …, 2013 - journals.plos.org
Advances in genomic studies have led to significant progress in understanding the
epigenetically controlled interplay between chromatin structure and nuclear functions …

Chromatin structure and replication origins: determinants of chromosome replication and nuclear organization

OK Smith, MI Aladjem - Journal of Molecular Biology, 2014 - Elsevier
The DNA replication program is, in part, determined by the epigenetic landscape that
governs local chromosome architecture and directs chromosome duplication. Replication …

Genome-wide analysis of the Arabidopsis replication timing program

L Concia, AM Brooks, E Wheeler, GJ Zynda… - Plant …, 2018 - academic.oup.com
Eukaryotes use a temporally regulated process, known as the replication timing program, to
ensure that their genomes are fully and accurately duplicated during S phase. Replication …

Orc1 binding to mitotic chromosomes precedes spatial patterning during G1 phase and assembly of the origin recognition complex in human cells

N Kara, M Hossain, SG Prasanth, B Stillman - Journal of Biological …, 2015 - jbc.org
Replication of eukaryotic chromosomes occurs once every cell division cycle in normal cells
and is a tightly controlled process that ensures complete genome duplication. The origin …

Genomic Analysis of the DNA Replication Timing Program during Mitotic S Phase in Maize (Zea mays) Root Tips

EE Wear, J Song, GJ Zynda, C LeBlanc, TJ Lee… - The Plant …, 2017 - academic.oup.com
All plants and animals must replicate their DNA, using a regulated process to ensure that
their genomes are completely and accurately replicated. DNA replication timing programs …