[HTML][HTML] The ONIOM method and its applications

LW Chung, WMC Sameera, R Ramozzi… - Chemical …, 2015 - ACS Publications
The fields of theoretical and computational chemistry have come a long way since their
inception in the mid-20th century. Fifty years ago, only rudimentary approximations for very …

Fragmentation methods: A route to accurate calculations on large systems

MS Gordon, DG Fedorov, SR Pruitt… - Chemical …, 2012 - ACS Publications
Theoretical chemists have always strived to perform quantum mechanics (QM) calculations
on larger and larger molecules and molecular systems, as well as condensed phase …

[書籍][B] Density functional theory

E Engel - 2011 - Springer
This book emerged from a course on density functional theory (DFT), first given at the
University of Munich more than a decade ago. The course was based on the classic texts by …

The Amber biomolecular simulation programs

DA Case, TE Cheatham III, T Darden… - Journal of …, 2005 - Wiley Online Library
We describe the development, current features, and some directions for future development
of the Amber package of computer programs. This package evolved from a program that was …

[PDF][PDF] Amber 10

DA Case, TA Darden, TE Cheatham, CL Simmerling… - 2008 - infoscience.epfl.ch
Amber is the collective name for a suite of programs that allow users to carry out molecular
dynamics simulations, particularly on biomolecules. None of the individual programs carries …

Quantum embedding theories

Q Sun, GKL Chan - Accounts of chemical research, 2016 - ACS Publications
Conspectus In complex systems, it is often the case that the region of interest forms only one
part of a much larger system. The idea of joining two different quantum simulations a high …

DFTB+, a sparse matrix-based implementation of the DFTB method

B Aradi, B Hourahine, T Frauenheim - The Journal of Physical …, 2007 - ACS Publications
A new Fortran 95 implementation of the DFTB (density functional-based tight binding)
method has been developed, where the sparsity of the DFTB system of equations has been …

[PDF][PDF] Implicit solvation models: equilibria, structure, spectra, and dynamics

CJ Cramer, DG Truhlar - Chemical Reviews, 1999 - Citeseer
The present review is concerned with continuum and other implicit models of solvation
effects. We will concentrate on the elements required to make such models successful and …

Linear scaling electronic structure methods

S Goedecker - Reviews of Modern Physics, 1999 - APS
Methods exhibiting linear scaling with respect to the size of the system, the so-called O (N)
methods, are an essential tool for the calculation of the electronic structure of large systems …

Density functional and density matrix method scaling linearly with the number of atoms

W Kohn - Physical Review Letters, 1996 - APS
A widely applicable “nearsightedness” principle is first discussed as the physical basis for
the existence of computational methods scaling linearly with the number of atoms. This …