Global signatures of protein and mRNA expression levels

R de Sousa Abreu, LO Penalva, EM Marcotte… - Molecular …, 2009 - pubs.rsc.org
Cellular states are determined by differential expression of the cell's proteins. The
relationship between protein and mRNA expression levels informs about the combined …

Stochasticity in gene expression: from theories to phenotypes

M Kaern, TC Elston, WJ Blake, JJ Collins - Nature Reviews Genetics, 2005 - nature.com
Genetically identical cells exposed to the same environmental conditions can show
significant variation in molecular content and marked differences in phenotypic …

Refinement of tools for targeted gene expression in Drosophila

BD Pfeiffer, TTB Ngo, KL Hibbard, C Murphy, A Jenett… - Genetics, 2010 - academic.oup.com
A wide variety of biological experiments rely on the ability to express an exogenous gene in
a transgenic animal at a defined level and in a spatially and temporally controlled pattern …

Noise in gene expression: origins, consequences, and control

JM Raser, EK O'shea - Science, 2005 - science.org
Genetically identical cells and organisms exhibit remarkable diversity even when they have
identical histories of environmental exposure. Noise, or variation, in the process of gene …

Gene regulatory programmes of tissue regeneration

JA Goldman, KD Poss - Nature Reviews Genetics, 2020 - nature.com
Regeneration is the process by which organisms replace lost or damaged tissue, and
regenerative capacity can vary greatly among species, tissues and life stages. Tissue …

Quantitative imaging of transcription in living Drosophila embryos links polymerase activity to patterning

HG Garcia, M Tikhonov, A Lin, T Gregor - Current biology, 2013 - cell.com
Spatiotemporal patterns of gene expression are fundamental to every developmental
program. The resulting macroscopic domains have been mainly characterized by their levels …

Double-edged sword: the evolutionary consequences of the epigenetic silencing of transposable elements

JY Choi, YCG Lee - PLoS genetics, 2020 - journals.plos.org
Transposable elements (TEs) are genomic parasites that selfishly replicate at the expense of
host fitness. Fifty years of evolutionary studies of TEs have concentrated on the deleterious …

[HTML][HTML] Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations

TB Kepler, TC Elston - Biophysical journal, 2001 - cell.com
Transcriptional regulation is an inherently noisy process. The origins of this stochastic
behavior can be traced to the random transitions among the discrete chemical states of …

Position-effect variegation, heterochromatin formation, and gene silencing in Drosophila

SCR Elgin, G Reuter - Cold Spring Harbor perspectives …, 2013 - cshperspectives.cshlp.org
Position-effect variegation (PEV) results when a gene normally in euchromatin is juxtaposed
with heterochromatin by rearrangement or transposition. When heterochromatin packaging …

Global reorganization of replication domains during embryonic stem cell differentiation

I Hiratani, T Ryba, M Itoh, T Yokochi, M Schwaiger… - PLoS …, 2008 - journals.plos.org
DNA replication in mammals is regulated via the coordinate firing of clusters of replicons that
duplicate megabase-sized chromosome segments at specific times during S-phase …