Smart breeding driven by big data, artificial intelligence, and integrated genomic-enviromic prediction

Y Xu, X Zhang, H Li, H Zheng, J Zhang, MS Olsen… - Molecular Plant, 2022 - cell.com
The first paradigm of plant breeding involves direct selection-based phenotypic observation,
followed by predictive breeding using statistical models for quantitative traits constructed …

Smart reprograming of plants against salinity stress using modern biotechnological tools

A Raza, J Tabassum, AZ Fakhar, R Sharif… - Critical reviews in …, 2023 - Taylor & Francis
Climate change gives rise to numerous environmental stresses, including soil salinity.
Salinity/salt stress is the second biggest abiotic factor affecting agricultural productivity …

Genomic selection in plant breeding: Key factors sha** two decades of progress

A Alemu, J Åstrand, OA Montesinos-Lopez… - Molecular Plant, 2024 - cell.com
Genomic selection, the application of genomic prediction (GP) models to select candidate
individuals, has significantly advanced in the past two decades, effectively accelerating …

[HTML][HTML] Designing future crops: genomics-assisted breeding comes of age

RK Varshney, A Bohra, J Yu, A Graner, Q Zhang… - Trends in plant …, 2021 - cell.com
Over the past decade, genomics-assisted breeding (GAB) has been instrumental in
harnessing the potential of modern genome resources and characterizing and exploiting …

Reap the crop wild relatives for breeding future crops

A Bohra, B Kilian, S Sivasankar, M Caccamo… - Trends in …, 2022 - cell.com
Crop wild relatives (CWRs) have provided breeders with several'game-changing'traits or
genes that have boosted crop resilience and global agricultural production. Advances in …

DNNGP, a deep neural network-based method for genomic prediction using multi-omics data in plants

K Wang, MA Abid, A Rasheed, J Crossa, S Hearne… - Molecular Plant, 2023 - cell.com
Genomic prediction is an effective way to accelerate the rate of agronomic trait improvement
in plants. Traditional methods typically use linear regression models with clear assumptions; …

Status and prospects of genome‐wide association studies in plants

L Tibbs Cortes, Z Zhang, J Yu - The plant genome, 2021 - Wiley Online Library
Genome‐wide association studies (GWAS) have developed into a powerful and ubiquitous
tool for the investigation of complex traits. In large part, this was fueled by advances in …

How plants tolerate salt stress

H Fu, Y Yang - Current Issues in Molecular Biology, 2023 - mdpi.com
Soil salinization inhibits plant growth and seriously restricts food security and agricultural
development. Excessive salt can cause ionic stress, osmotic stress, and ultimately oxidative …

LightGBM: accelerated genomically designed crop breeding through ensemble learning

J Yan, Y Xu, Q Cheng, S Jiang, Q Wang, Y **ao, C Ma… - Genome biology, 2021 - Springer
LightGBM is an ensemble model of decision trees for classification and regression
prediction. We demonstrate its utility in genomic selection-assisted breeding with a large …

[HTML][HTML] Drought stress in grain legumes: Effects, tolerance mechanisms and management

M Khatun, S Sarkar, FM Era, AKMM Islam, MP Anwar… - Agronomy, 2021 - mdpi.com
Grain legumes are important sources of proteins, essential micronutrients and vitamins and
for human nutrition. Climate change, including drought, is a severe threat to grain legume …