The art and science of molecular docking

JM Paggi, A Pandit, RO Dror - Annual Review of Biochemistry, 2024 - annualreviews.org
Molecular docking has become an essential part of a structural biologist's and medicinal
chemist's toolkits. Given a chemical compound and the three-dimensional structure of a …

Current trends in computer aided drug design and a highlight of drugs discovered via computational techniques: A review

VT Sabe, T Ntombela, LA Jhamba… - European Journal of …, 2021 - Elsevier
Computer-aided drug design (CADD) is one of the pivotal approaches to contemporary pre-
clinical drug discovery, and various computational techniques and software programs are …

[HTML][HTML] Application of computational biology and artificial intelligence in drug design

Y Zhang, M Luo, P Wu, S Wu, TY Lee, C Bai - International journal of …, 2022 - mdpi.com
Traditional drug design requires a great amount of research time and developmental
expense. Booming computational approaches, including computational biology, computer …

Targeting SARS-CoV-2: a systematic drug repurposing approach to identify promising inhibitors against 3C-like proteinase and 2′-O-ribose methyltransferase

RJ Khan, RK Jha, GM Amera, M Jain… - Journal of …, 2021 - Taylor & Francis
The recent pandemic associated with SARS-CoV-2, a virus of the Coronaviridae family, has
resulted in an unprecedented number of infected people. The highly contagious nature of …

Merging ligand-based and structure-based methods in drug discovery: an overview of combined virtual screening approaches

J Vázquez, M López, E Gibert, E Herrero, FJ Luque - Molecules, 2020 - mdpi.com
Virtual screening (VS) is an outstanding cornerstone in the drug discovery pipeline. A variety
of computational approaches, which are generally classified as ligand-based (LB) and …

[HTML][HTML] Concepts and core principles of fragment-based drug design

P Kirsch, AM Hartman, AKH Hirsch, M Empting - Molecules, 2019 - mdpi.com
In this review, a general introduction to fragment-based drug design and the underlying
concepts is given. General considerations and methodologies ranging from library …

A comprehensive application: Molecular docking and network pharmacology for the prediction of bioactive constituents and elucidation of mechanisms of action in …

X Jiao, X **, Y Ma, Y Yang, J Li, L Liang, R Liu… - … Biology and Chemistry, 2021 - Elsevier
Traditional Chinese medicine (TCM) has been used for more than 2000 years in China.
TCM has received wide attention recently due to its unique charm. At the same time, its main …

LIT-PCBA: an unbiased data set for machine learning and virtual screening

VK Tran-Nguyen, C Jacquemard… - Journal of chemical …, 2020 - ACS Publications
Comparative evaluation of virtual screening methods requires a rigorous benchmarking
procedure on diverse, realistic, and unbiased data sets. Recent investigations from …

Advancements in small molecule drug design: A structural perspective

K Wu, E Karapetyan, J Schloss, J Vadgama, Y Wu - Drug Discovery Today, 2023 - Elsevier
Highlights•Importance of accurate protein structure prediction for small molecule drug
design.•Key structural features and properties used in small molecule drug …

[HTML][HTML] The role and potential of computer-aided drug discovery strategies in the discovery of novel antimicrobials

SO Oselusi, P Dube, AI Odugbemi, KA Akinyede… - Computers in biology …, 2024 - Elsevier
Antimicrobial resistance (AMR) has become more of a concern in recent decades,
particularly in infections associated with global public health threats. The development of …