HOOMD-blue: A Python package for high-performance molecular dynamics and hard particle Monte Carlo simulations

JA Anderson, J Glaser, SC Glotzer - Computational Materials Science, 2020 - Elsevier
HOOMD-blue is a particle simulation engine designed for nano-and colloidal-scale
molecular dynamics and hard particle Monte Carlo simulations. It has been actively …

Computer simulation of liquid metals

DK Belashchenko - Physics-Uspekhi, 2013 - iopscience.iop.org
Methods for and the results of the computer simulation of liquid metals are reviewed. Two
basic methods, classical molecular dynamics with known interparticle potentials and the ab …

Efficient molecular dynamics simulations with many-body potentials on graphics processing units

Z Fan, W Chen, V Vierimaa, A Harju - Computer Physics Communications, 2017 - Elsevier
Graphics processing units have been extensively used to accelerate classical molecular
dynamics simulations. However, there is much less progress on the acceleration of force …

Implementing molecular dynamics on hybrid high performance computers—three-body potentials

WM Brown, M Yamada - Computer Physics Communications, 2013 - Elsevier
The use of coprocessors or accelerators such as graphics processing units (GPUs) has
become popular in scientific computing applications due to their low cost, impressive floating …

Edge compression: An integrated framework for compressive imaging processing on cavs

S Lu, X Yuan, W Shi - 2020 IEEE/ACM Symposium on Edge …, 2020 - ieeexplore.ieee.org
Machine vision is the key to the successful deployment of many Advanced Driver Assistant
System (ADAS)/Automated Driving System (ADS) functions, which require accurate high …

GPU-accelerated Tersoff potentials for massively parallel Molecular Dynamics simulations

TD Nguyen - Computer Physics Communications, 2017 - Elsevier
The Tersoff potential is one of the empirical many-body potentials that has been widely used
in simulation studies at atomic scales. Unlike pair-wise potentials, the Tersoff potential …

Atomistic model of an oxide film in contact with a liquid metal coolant: defects concentrations and chemical potentials of dissolved Fe–O

NA Fominykh, VP Nikolskiy, VV Stegailov - Computational Materials …, 2023 - Elsevier
The paper considers a prototype atomistic model of an oxide film with a wüstite structure in
contact with a liquid metal coolant containing dissolved iron and oxygen. On the basis of …

Supramolecular organization of functional organic materials in the bulk and at organic/organic interfaces: A modeling and computer simulation approach

L Muccioli, G D'Avino, R Berardi, S Orlandi… - Multiscale Modelling of …, 2014 - Springer
The molecular organization of functional organic materials is one of the research areas
where the combination of theoretical modeling and experimental determinations is most …

Impact of COVID-19 on city-scale transportation and safety: An early experience from Detroit

Y Yao, TG Geara, W Shi - Smart Health, 2021 - Elsevier
The COVID-19 pandemic brought unprecedented levels of disruption to the local and
regional transportation networks throughout the United States, especially the Motor City …

Ultra-coarse-graining of homopolymers in inhomogeneous systems

F Berressem, C Scherer, D Andrienko… - Journal of Physics …, 2021 - iopscience.iop.org
We develop coarse-grained (CG) models for simulating homopolymers in inhomogeneous
systems, focusing on polymer films and droplets. If the CG polymers interact solely through …