Overview of histone modification

Y Zhang, Z Sun, J Jia, T Du, N Zhang, Y Tang… - Histone Mutations and …, 2021 - Springer
Epigenetics is the epi-information beyond the DNA sequence that can be inherited from
parents to offspring. From years of studies, people have found that histone modifications …

Super-enhancer function and its application in cancer targeted therapy

F Tang, Z Yang, Y Tan, Y Li - NPJ precision oncology, 2020 - nature.com
Abstract Recently, super-enhancers (SEs) have been identified as a unique type of
transcriptional regulation involved in cancer development. SEs exhibit a size, high …

EnhancerAtlas 2.0: an updated resource with enhancer annotation in 586 tissue/cell types across nine species

T Gao, J Qian - Nucleic acids research, 2020 - academic.oup.com
Enhancers are distal cis-regulatory elements that activate the transcription of their target
genes. They regulate a wide range of important biological functions and processes …

Systematic analysis of telomere length and somatic alterations in 31 cancer types

FP Barthel, W Wei, M Tang, E Martinez-Ledesma… - Nature …, 2017 - nature.com
Cancer cells survive cellular crisis through telomere maintenance mechanisms. We report
telomere lengths in 18,430 samples, including tumors and non-neoplastic samples, across …

SEdb 2.0: a comprehensive super-enhancer database of human and mouse

Y Wang, C Song, J Zhao, Y Zhang, X Zhao… - Nucleic Acids …, 2023 - academic.oup.com
Super-enhancers (SEs) are cell-specific DNA cis-regulatory elements that can supervise the
transcriptional regulation processes of downstream genes. SEdb 2.0 (http://www. licpathway …

Acetylation of histone H2B marks active enhancers and predicts CBP/p300 target genes

T Narita, Y Higashijima, S Kilic, T Liebner, J Walter… - Nature Genetics, 2023 - nature.com
Chromatin features are widely used for genome-scale map** of enhancers. However,
discriminating active enhancers from other cis-regulatory elements, predicting enhancer …

UCSC Genome Browser enters 20th year

CM Lee, GP Barber, J Casper, H Clawson… - Nucleic acids …, 2020 - academic.oup.com
Abstract The University of California Santa Cruz Genome Browser website (https://genome.
ucsc. edu) enters its 20th year of providing high-quality genomics data visualization and …

HIV-1 replication complexes accumulate in nuclear speckles and integrate into speckle-associated genomic domains

AC Francis, M Marin, PK Singh, V Achuthan… - Nature …, 2020 - nature.com
The early steps of HIV-1 infection, such as uncoating, reverse transcription, nuclear import,
and transport to integration sites are incompletely understood. Here, we imaged nuclear …

Whole-genome sequencing of acral melanoma reveals genomic complexity and diversity

F Newell, JS Wilmott, PA Johansson, K Nones… - Nature …, 2020 - nature.com
To increase understanding of the genomic landscape of acral melanoma, a rare form of
melanoma occurring on palms, soles or nail beds, whole genome sequencing of 87 tumors …

[HTML][HTML] Evolutionary trajectories of IDHWT glioblastomas reveal a common path of early tumorigenesis instigated years ahead of initial diagnosis

V Körber, J Yang, P Barah, Y Wu, D Stichel, Z Gu… - Cancer cell, 2019 - cell.com
We studied how intratumoral genetic heterogeneity shapes tumor growth and therapy
response for isocitrate dehydrogenase (IDH)-wild-type glioblastoma, a rapidly regrowing …