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A reference genome for pea provides insight into legume genome evolution
We report the first annotated chromosome-level reference genome assembly for pea, Gregor
Mendel's original genetic model. Phylogenetics and paleogenomics show genomic …
Mendel's original genetic model. Phylogenetics and paleogenomics show genomic …
expVIP: a customizable RNA-seq data analysis and visualization platform
The majority of transcriptome sequencing (RNA-seq) expression studies in plants remain
underutilized and inaccessible due to the use of disparate transcriptome references and the …
underutilized and inaccessible due to the use of disparate transcriptome references and the …
Sequenceserver: a modern graphical user interface for custom BLAST databases
Comparing newly obtained and previously known nucleotide and amino-acid sequences
underpins modern biological research. BLAST is a well-established tool for such …
underpins modern biological research. BLAST is a well-established tool for such …
The long intergenic noncoding RNA landscape of human lymphocytes highlights the regulation of T cell differentiation by linc-MAF-4
V Ranzani, G Rossetti, I Panzeri, A Arrigoni… - Nature …, 2015 - nature.com
Long noncoding RNAs are emerging as important regulators of cellular functions, but little is
known of their role in the human immune system. Here we investigated long intergenic …
known of their role in the human immune system. Here we investigated long intergenic …
PolyMarker: a fast polyploid primer design pipeline
The design of genetic markers is of particular relevance in crop breeding programs. Despite
many economically important crops being polyploid organisms, the current primer design …
many economically important crops being polyploid organisms, the current primer design …
Discovery of a novel methanogen prevalent in thawing permafrost
Thawing permafrost promotes microbial degradation of cryo-sequestered and new carbon
leading to the biogenic production of methane, creating a positive feedback to climate …
leading to the biogenic production of methane, creating a positive feedback to climate …
Tools and data services registry: a community effort to document bioinformatics resources
Life sciences are yielding huge data sets that underpin scientific discoveries fundamental to
improvement in human health, agriculture and the environment. In support of these …
improvement in human health, agriculture and the environment. In support of these …
Ten simple rules for the open development of scientific software
Open-source software development has had significant impact, not only on society, but also
on scientific research. Papers describing software published as open source are amongst …
on scientific research. Papers describing software published as open source are amongst …
bio-samtools 2: a package for analysis and visualization of sequence and alignment data with SAMtools in Ruby
Motivation: bio-samtools is a Ruby language interface to SAMtools, the highly popular library
that provides utilities for manipulating high-throughput sequence alignments in the …
that provides utilities for manipulating high-throughput sequence alignments in the …
An in-silico study of the mutation-associated effects on the spike protein of SARS-CoV-2, Omicron variant
The emergence of Omicron (B. 1.1. 529), a new Variant of Concern in the COVID-19
pandemic, while accompanied by the ongoing Delta variant infection, has once again fueled …
pandemic, while accompanied by the ongoing Delta variant infection, has once again fueled …