Disentangling neural cell diversity using single-cell transcriptomics

JF Poulin, B Tasic, J Hjerling-Leffler, JM Trimarchi… - Nature …, 2016 - nature.com
Cellular specialization is particularly prominent in mammalian nervous systems, which are
composed of millions to billions of neurons that appear in thousands of different'flavors' and …

Astrocytes locally translate transcripts in their peripheral processes

K Sakers, AM Lake, R Khazanchi… - Proceedings of the …, 2017 - National Acad Sciences
Local translation in neuronal processes is key to the alteration of synaptic strength
necessary for long-term potentiation, learning, and memory. Here, we present evidence that …

[HTML][HTML] The local transcriptome in the synaptic neuropil revealed by deep sequencing and high-resolution imaging

IJ Cajigas, G Tushev, TJ Will, S tom Dieck, N Fuerst… - Neuron, 2012 - cell.com
In neurons, dendritic protein synthesis is required for many forms of long-term synaptic
plasticity. The population of mRNAs that are localized to dendrites, however, remains …

Hipposeq: a comprehensive RNA-seq database of gene expression in hippocampal principal neurons

MS Cembrowski, L Wang, K Sugino, BC Shields… - elife, 2016 - elifesciences.org
Clarifying gene expression in narrowly defined neuronal populations can provide insight
into cellular identity, computation, and functionality. Here, we used next-generation RNA …

Integration of electrophysiological recordings with single-cell RNA-seq data identifies neuronal subtypes

J Fuzik, A Zeisel, Z Máté, D Calvigioni… - Nature …, 2016 - nature.com
Traditionally, neuroscientists have defined the identity of neurons by the cells' location,
morphology, connectivity and excitability. However, the direct relationship between these …

Neurons and neuronal activity control gene expression in astrocytes to regulate their development and metabolism

P Hasel, O Dando, Z Jiwaji, P Baxter, AC Todd… - Nature …, 2017 - nature.com
The influence that neurons exert on astrocytic function is poorly understood. To investigate
this, we first developed a system combining cortical neurons and astrocytes from closely …

Identification of preoptic sleep neurons using retrograde labelling and gene profiling

S Chung, F Weber, P Zhong, CL Tan, TN Nguyen… - Nature, 2017 - nature.com
In humans and other mammalian species, lesions in the preoptic area of the hypothalamus
cause profound sleep impairment,,,,, indicating a crucial role of the preoptic area in sleep …

[HTML][HTML] Microglial identity and inflammatory responses are controlled by the combined effects of neurons and astrocytes

PS Baxter, O Dando, K Emelianova, X He, S McKay… - Cell reports, 2021 - cell.com
Microglia, brain-resident macrophages, require instruction from the CNS microenvironment
to maintain their identity and morphology and regulate inflammatory responses, although …

Cell type-specific transcriptomics of hypothalamic energy-sensing neuron responses to weight-loss

FE Henry, K Sugino, A Tozer, T Branco, SM Sternson - Elife, 2015 - elifesciences.org
Molecular and cellular processes in neurons are critical for sensing and responding to
energy deficit states, such as during weight-loss. Agouti related protein (AGRP)-expressing …

Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue

D Lovatt, BK Ruble, J Lee, H Dueck, TK Kim, S Fisher… - Nature …, 2014 - nature.com
Transcriptome profiling of single cells resident in their natural microenvironment depends
upon RNA capture methods that are both noninvasive and spatially precise. We engineered …