Calibration of ionic and cellular cardiac electrophysiology models

DG Whittaker, M Clerx, CL Lei… - … Systems Biology and …, 2020 - Wiley Online Library
Cardiac electrophysiology models are among the most mature and well‐studied
mathematical models of biological systems. This maturity is bringing new challenges as …

A review on computer model calibration

CL Sung, R Tuo - Wiley Interdisciplinary Reviews …, 2024 - Wiley Online Library
Abstract Model calibration is crucial for optimizing the performance of complex computer
models across various disciplines. In the era of Industry 4.0, symbolizing rapid technological …

Process‐based climate model development harnessing machine learning: I. A calibration tool for parameterization improvement

F Couvreux, F Hourdin, D Williamson… - Journal of Advances …, 2021 - Wiley Online Library
The development of parameterizations is a major task in the development of weather and
climate models. Model improvement has been slow in the past decades, due to the difficulty …

The importance of uncertainty quantification in model reproducibility

V Volodina, P Challenor - Philosophical Transactions of …, 2021 - royalsocietypublishing.org
Many computer models possess high-dimensional input spaces and substantial
computational time to produce a single model evaluation. Although such models are often …

June: open-source individual-based epidemiology simulation

J Aylett-Bullock, C Cuesta-Lazaro… - Royal Society …, 2021 - royalsocietypublishing.org
We introduce June, an open-source framework for the detailed simulation of epidemics on
the basis of social interactions in a virtual population constructed from geographically …

Analyzing stochastic computer models: A review with opportunities

E Baker, P Barbillon, A Fadikar, RB Gramacy… - Statistical …, 2022 - projecteuclid.org
Analyzing Stochastic Computer Models: A Review with Opportunities Page 1 Statistical
Science 2022, Vol. 37, No. 1, 64–89 https://doi.org/10.1214/21-STS822 © Institute of …

Calibrating a stochastic, agent-based model using quantile-based emulation

A Fadikar, D Higdon, J Chen, B Lewis… - SIAM/ASA Journal on …, 2018 - SIAM
In a number of cases, the quantile Gaussian process has proven effective in emulating
stochastic, univariate computer model output [M. Plumlee and R. Tuo, Technometrics, 56 …

Bayesian uncertainty analysis for complex systems biology models: emulation, global parameter searches and evaluation of gene functions

I Vernon, J Liu, M Goldstein, J Rowe, J Top**… - BMC systems …, 2018 - Springer
Background Many mathematical models have now been employed across every area of
systems biology. These models increasingly involve large numbers of unknown parameters …

Universal test, treat, and keep: improving ART retention is key in cost-effective HIV control in Uganda

N McCreesh, I Andrianakis, RN Nsubuga… - BMC infectious …, 2017 - Springer
Background With ambitious new UNAIDS targets to end AIDS by 2030, and new WHO
treatment guidelines, there is increased interest in the best way to scale-up ART coverage …

The use of mixture density networks in the emulation of complex epidemiological individual-based models

CN Davis, TD Hollingsworth, Q Caudron… - PLoS computational …, 2020 - journals.plos.org
Complex, highly-computational, individual-based models are abundant in epidemiology. For
epidemics such as macro-parasitic diseases, detailed modelling of human behaviour and …