Genome-scale models in human metabologenomics
Metabologenomics integrates metabolomics with other omics data types to comprehensively
study the genetic and environmental factors that influence metabolism. These multi-omics …
study the genetic and environmental factors that influence metabolism. These multi-omics …
State-of the-art constraint-based modeling of microbial metabolism: from basics to context-specific models with a focus on methanotrophs
Methanotrophy is the ability of an organism to capture and utilize the greenhouse gas,
methane, as a source of energy-rich carbon. Over the years, significant progress has been …
methane, as a source of energy-rich carbon. Over the years, significant progress has been …
pan-Draft: automated reconstruction of species-representative metabolic models from multiple genomes
The accurate reconstruction of genome-scale metabolic models (GEMs) for unculturable
species poses challenges due to the incomplete and fragmented genetic information typical …
species poses challenges due to the incomplete and fragmented genetic information typical …
Transporter annotations are holding up progress in metabolic modeling
Mechanistic, constraint-based models of microbial isolates or communities are a staple in
the metabolic analysis toolbox, but predictions about microbe-microbe and microbe …
the metabolic analysis toolbox, but predictions about microbe-microbe and microbe …
Emerging methods for genome-scale metabolic modeling of microbial communities
Genome-scale metabolic models (GEMs) are consolidating as platforms for studying mixed
microbial populations, by combining biological data and knowledge with mathematical rigor …
microbial populations, by combining biological data and knowledge with mathematical rigor …
A review and prospects: Multi-omics and artificial intelligence-based approaches to understanding the effects of lactic acid bacteria and yeast interactions on …
J Yuan, D Ma, Y Yang, Y Zhao, H Ren, X Liu… - Innovative Food Science …, 2024 - Elsevier
There are numerous reports on the effect of co-culturing lactic acid bacteria (LAB) and yeast
on the quality of fermented foods. The interactions between LAB and yeast affect the flavour …
on the quality of fermented foods. The interactions between LAB and yeast affect the flavour …
Metabolic model-based ecological modeling for probiotic design
The microbial community composition in the human gut has a profound effect on human
health. This observation has lead to extensive use of microbiome therapies, including over …
health. This observation has lead to extensive use of microbiome therapies, including over …
[HTML][HTML] Genomic Science Program US Department of Energy| Office of Science| Biological and Environmental Research Program
Most elemental cycles in Earth's surface environment are mediated by microbial reactions.
To quantify these transformations and predict the distribution of nutrients and other …
To quantify these transformations and predict the distribution of nutrients and other …