Biodiversity of microorganisms in the Baltic Sea: the power of novel methods in the identification of marine microbes

H Mazur-Marzec, AF Andersson… - FEMS Microbiology …, 2024 - academic.oup.com
Until recently, the data on the diversity of the entire microbial community from the Baltic Sea
were relatively rare and very scarce. However, modern molecular methods have provided …

Seasonality of parasitic and saprotrophic zoosporic fungi: linking sequence data to ecological traits

S Van den Wyngaert, L Ganzert, K Seto… - The ISME …, 2022 - academic.oup.com
Zoosporic fungi of the phylum Chytridiomycota (chytrids) regularly dominate pelagic fungal
communities in freshwater and marine environments. Their lifestyles range from obligate …

The potential of multispectral imaging flow cytometry for environmental monitoring

S Dunker, M Boyd, W Durka, S Erler… - Cytometry Part …, 2022 - Wiley Online Library
Environmental monitoring involves the quantification of microscopic cells and particles such
as algae, plant cells, pollen, or fungal spores. Traditional methods using conventional …

Fungal parasitism on diatoms alters formation and bio–physical properties of sinking aggregates

I Klawonn, S Van den Wyngaert, MH Iversen… - Communications …, 2023 - nature.com
Phytoplankton forms the base of aquatic food webs and element cycling in diverse aquatic
systems. The fate of phytoplankton-derived organic matter, however, often remains …

An Interpretable Framework to Characterize Compound Treatments on Filamentous Fungi using Cell Painting and Deep Metric Learning

L Lejeune, M Roussin, B Leggio… - Proceedings of the …, 2023 - openaccess.thecvf.com
The cell painting microscopy imaging protocol has reccently gained traction in the biology
community as it allows, through the addition of fluorescent dyes, to acquire images that …

Long‐term trends and seasonal variation in host density, temperature, and nutrients differentially affect chytrid fungi parasitising lake phytoplankton

AS Gsell, J Wolinska, K Preuß, S Teurlincx… - Freshwater …, 2022 - Wiley Online Library
Parasites are generally considered the most commonly occurring type of consumers, yet
their biomass and population dynamics are rarely quantified at community level. Here, we …

Chytrid fungi infecting Arctic microphytobenthic communities under varying salinity conditions

D Ilicic, J Woodhouse, U Karsten, K Schimani… - Scientific Reports, 2024 - nature.com
This study aimed to investigate the presence and diversity of fungal parasites in Arctic
coastal microphytobenthic communities. These communities represent a key component in …

Novel parasitic chytrids infecting snow algae in an alpine snow ecosystem in Japan

H Nakanishi, K Seto, N Takeuchi… - Frontiers in Microbiology, 2023 - frontiersin.org
Introduction Microbial communities are important components of glacier and snowpack
ecosystems that influence biogeochemical cycles and snow/ice melt. Recent environmental …

Dark ice in a warming world: advances and challenges in the study of Greenland Ice Sheet's biological darkening

L Halbach, LA Chevrollier, JM Cook, IT Stevens… - Annals of …, 2022 - cambridge.org
The surface of the Greenland Ice Sheet is darkening, which accelerates its surface melt. The
role of glacier ice algae in reducing surface albedo is widely recognised but not well …

Metabarcoding reveals ecologically distinct fungal assemblages in river and groundwater along an Austrian alpine to lowland gradient

A Retter, C Griebler, RH Nilsson, J Haas… - FEMS microbiology …, 2024 - academic.oup.com
Biodiversity, the source of origin, and ecological roles of fungi in groundwater are to this day
a largely neglected field in fungal and freshwater ecology. We used DNA-based Illumina …